RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 ANO5Q75V66 913 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 RASSF3Q86WH2 238 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 KRTAP19-1Q8IUB9 90 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 TCEAL8Q8IYN2 117 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 DEFB119Q8N690 84 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 CNNM3Q8NE01 707 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 TSTD1Q8NFU3 115 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 CTCFLQ8NI51 663 aaPredicted RBP8.4□□□□□ -1.06
SMAD4-209ENST00000589941 OLIG1Q8TAK6 271 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 PRPF31Q8WWY3 499 aaKnown RBP8.4□□□□□ -1.06
SMAD4-209ENST00000589941 ZSWIM4Q9H7M6 989 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 GOLGA2P5Q9HBQ8 144 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 TBC1D22BQ9NU19 505 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 MTMR6Q9Y217 621 aa8.4□□□□□ -1.06
SMAD4-209ENST00000589941 ITPR3Q14573 2671 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 MYO18AQ92614 2054 aaKnown RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 MYOFQ9NZM1 2061 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 NID2Q14112 1375 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 TRBV23-1A0A0A0MS06 115 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 KRTAP9-6A0A140TA67 174 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ABLIM1O14639 778 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 CAPN9O14815 690 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 EDIL3O43854 480 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 SEMA7AO75326 666 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ERLIN2O94905 339 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ATXN1LP0C7T5 689 aaKnown RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 CALM1P0DP23 149 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 CALM2P0DP24 149 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 CALM3P0DP25 149 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 MED14OSP0DP75 135 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ATF2P15336 505 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 SYT1P21579 422 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 DNM2P50570 870 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 CDR1P51861 262 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ATXN3P54252 364 aaPredicted RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 EPHB3P54753 998 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 DLG4P78352 724 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 PRR5P85299 388 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 MBTD1Q05BQ5 628 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ST3GAL1Q11201 340 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 USP39Q53GS9 565 aaKnown RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 PRR16Q569H4 304 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 LYSMD4Q5XG99 296 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 SLC8B1Q6J4K2 584 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ATG14Q6ZNE5 492 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 RBM43Q6ZSC3 357 aaKnown RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 TMTC3Q6ZXV5 915 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 GAREM2Q75VX8 874 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 RTL10Q7L3V2 364 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 SRGAP1Q7Z6B7 1085 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 RNF149Q8NC42 400 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ZNF461Q8TAF7 563 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 IGDCC4Q8TDY8 1250 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 RUFY2Q8WXA3 655 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 RILPL2Q969X0 211 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 CNOT6LQ96LI5 555 aaKnown RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 EBF3Q9H4W6 596 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 PIF1Q9H611 641 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 SIRT5Q9NXA8 310 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 PPARGC1AQ9UBK2 798 aaKnown RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 SRPK3Q9UPE1 567 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 YIPF1Q9Y548 306 aa8.39□□□□□ -1.07
SMAD4-209ENST00000589941 USP9YO00507 2555 aaPredicted RBP8.39□□□□□ -1.07
SMAD4-209ENST00000589941 ITPR2Q14571 2701 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 B8ZZF3 427 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 MSH4O15457 936 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 CYP3A4P08684 503 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 CYP21A2P08686 494 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 TMEM253P0C7T8 217 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 GLDCP23378 1020 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 P2RY2P41231 377 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 CDC42EP1Q00587 391 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 SETQ01105 290 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-209ENST00000589941 GFPT1Q06210 699 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-209ENST00000589941 NECTIN1Q15223 517 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 XKR3Q5GH77 459 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 GLRA4Q5JXX5 417 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 LPCAT2Q7L5N7 544 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 TTC30AQ86WT1 665 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 SFTPA1Q8IWL2 248 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 SCUBE1Q8IWY4 988 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 MB21D2Q8IYB1 491 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-209ENST00000589941 Q8N1Y9 231 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 NETO2Q8NC67 525 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 SPATA18Q8TC71 538 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 E2F7Q96AV8 911 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 CDC6Q99741 560 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 TRIM6Q9C030 488 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-209ENST00000589941 GPR27Q9NS67 375 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 WRAP73Q9P2S5 460 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-209ENST00000589941 APOBEC2Q9Y235 224 aaKnown RBP8.38□□□□□ -1.07
SMAD4-209ENST00000589941 CCL26Q9Y258 94 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 NOTCH2Q04721 2471 aa8.38□□□□□ -1.07
SMAD4-209ENST00000589941 C2CD3Q4AC94 2353 aa8.37□□□□□ -1.07
SMAD4-209ENST00000589941 ERICH2A1L162 156 aa8.37□□□□□ -1.07
SMAD4-209ENST00000589941 HIP1O00291 1037 aa8.37□□□□□ -1.07
SMAD4-209ENST00000589941 PLK4O00444 970 aa8.37□□□□□ -1.07
SMAD4-209ENST00000589941 TBX3O15119 743 aa8.37□□□□□ -1.07
SMAD4-209ENST00000589941 RECQL4O94761 1208 aa8.37□□□□□ -1.07
SMAD4-209ENST00000589941 TSPAN15O95858 294 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms