RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 GALNT7Q86SF2 657 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CHD1LQ86WJ1 897 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 MAP7D3Q8IWC1 876 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 HACE1Q8IYU2 909 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SCYL3Q8IZE3 742 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SYNE4Q8N205 404 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PQLC1Q8N2U9 271 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ZNF276Q8N554 614 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 NKAIN3Q8N8D7 197 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 BBOF1Q8ND07 529 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 C7orf57Q8NEG2 295 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 OR7G1Q8NGA0 311 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SLC25A43Q8WUT9 341 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 STON2Q8WXE9 905 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ATL1Q8WXF7 558 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 HERVK_113Q902F9 699 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TFAP2CQ92754 450 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CCDC127Q96BQ5 260 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 HAUS1Q96CS2 278 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 MTMR8Q96EF0 704 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 HIC2Q96JB3 615 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PRAM1Q96QH2 718 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CIB1Q99828 191 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SH3GL2Q99962 352 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TUBA1CQ9BQE3 449 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GPATCH1Q9BRR8 931 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 HAUS8Q9BT25 410 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 MRIQ9BWK5 157 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SENP6Q9GZR1 1112 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 VPS16Q9H269 839 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 NDST4Q9H3R1 872 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 LDAHQ9H6V9 325 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ANKZF1Q9H8Y5 726 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PSTPIP2Q9H939 334 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 UBN1Q9NPG3 1134 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 RIC8AQ9NPQ8 531 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CHST12Q9NRB3 414 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 FARSBQ9NSD9 589 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 RBM12Q9NTZ6 932 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 THAP1Q9NVV9 213 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TRPM5Q9NZQ8 1165 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ZNF69Q9UC07 566 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 MTRF1LQ9UGC7 380 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 LNPEPQ9UIQ6 1025 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ING1Q9UK53 422 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 ZMYND8Q9ULU4 1186 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 DDX19BQ9UMR2 479 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 AGAP1Q9UPQ3 857 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CLCA2Q9UQC9 943 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CHMP2BQ9UQN3 213 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GPR45Q9Y5Y3 372 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 FAM135BQ49AJ0 1406 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 FMN1Q68DA7 1419 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SSH2Q76I76 1423 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TCHHQ07283 1943 aa3.4□□□□□ -1.86
VPS35-208ENST00000568612 TRAV6A0A075B6T7 132 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MACROD2A1Z1Q3 448 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 OR6C65A6NJZ3 312 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 B5MCH6 92 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 APOL1O14791 398 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CETN3O15182 167 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 RNF113AO15541 343 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 EIF4G3O43432 1585 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 XPOTO43592 962 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 CCNT1O60563 726 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 ZC3H11AO75152 810 aaKnown RBP eCLIP3.4□□□□□ -1.87
VPS35-208ENST00000568612 GUCY1B2O75343 617 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 TSPAN9O75954 239 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 APBB3O95704 486 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CRYZL1O95825 349 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 LMNAP02545 664 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 IFIT2P09913 472 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 CALM1P0DP23 149 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CALM2P0DP24 149 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CALM3P0DP25 149 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SRGNP10124 158 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MYBL1P10243 752 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 KRT13P13646 458 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ZNF3P17036 446 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ATP6V1C1P21283 382 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 IL10P22301 178 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 TBXAS1P24557 533 aaPredicted RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 EVI2BP34910 448 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ADD2P35612 726 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ACVRL1P37023 503 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 UBA7P41226 1012 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 IARSP41252 1262 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 TMED10P49755 219 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 HMGA2P52926 109 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ERVK-21P61565 698 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 UBE2HP62256 183 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SLC25A3Q00325 362 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 NHLH2Q02577 135 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 EXOSC9Q06265 439 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 CDK18Q07002 472 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 LRRC74AQ0VAA2 488 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CETN1Q12798 172 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SMARCB1Q12824 385 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MALLQ13021 153 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 STK3Q13188 491 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms