RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 FNIP2Q9P278 1114 aa6.96□□□□□ -1.3
USP48-208ENST00000479177 AFF4Q9UHB7 1163 aaKnown RBP6.96□□□□□ -1.3
USP48-208ENST00000479177 LCMT1Q9UIC8 334 aa6.96□□□□□ -1.3
USP48-208ENST00000479177 TMEM59LQ9UK28 342 aa6.96□□□□□ -1.3
USP48-208ENST00000479177 RAXQ9Y2V3 346 aa6.96□□□□□ -1.3
USP48-208ENST00000479177 JRKLQ9Y4A0 524 aa6.96□□□□□ -1.3
USP48-208ENST00000479177 BRWD1Q9NSI6 2320 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 CTAGE9A4FU28 777 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 C2CD4BA6NLJ0 364 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 TMEM110-MUSTN1A8MSY1 372 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 MYO1FO00160 1098 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ENC1O14682 589 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 TEX28O15482 410 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 NCK2O43639 380 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 HSF2BPO75031 334 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 SOAT2O75908 522 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ABLIM3O94929 683 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ZBED1O96006 694 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 RB1P06400 928 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 CNPP09543 421 aaKnown RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 ADH5P11766 374 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 KRT3P12035 628 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ATF6P18850 670 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 COMTP21964 271 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 DNAJB1P25685 340 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 GSTT1P30711 240 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 CASQ1P31415 396 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 BMP8BP34820 402 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 RFC1P35251 1148 aaPredicted RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 FLT3P36888 993 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 GRIK1P39086 918 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 NDUFV1P49821 464 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 DAOAP59103 153 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ERVK-21P61565 698 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 MRPS5P82675 430 aaKnown RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 UBE3AQ05086 875 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 MESDQ14696 234 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 TAF5Q15542 800 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 RAB30Q15771 203 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 PTPROQ16827 1216 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 MEI1Q5TIA1 1274 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 SDHAF4Q5VUM1 108 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 PAPD7Q5XG87 772 aaKnown RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 PM20D1Q6GTS8 502 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ARCQ7LC44 396 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 PDZD3Q86UT5 571 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 NT5DC3Q86UY8 548 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 SCN4BQ8IWT1 228 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 TRIM42Q8IWZ5 723 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 FAM20CQ8IXL6 584 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 EMC1Q8N766 993 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 C2CD4AQ8NCU7 369 aaPredicted RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 STKLD1Q8NE28 680 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 KIF18AQ8NI77 898 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 SPPL3Q8TCT6 385 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 IRGQQ8WZA9 623 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 CD101Q93033 1021 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 SPATA17Q96L03 361 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 NECAB3Q96P71 396 aaPredicted RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 SLC2A13Q96QE2 648 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 SEPT5Q99719 369 aaPredicted RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 TCF25Q9BQ70 676 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 C7orf69Q9H7B7 122 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 CYP4F12Q9HCS2 524 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 ALG13Q9NP73 1137 aaKnown RBP6.95□□□□□ -1.3
USP48-208ENST00000479177 TLR9Q9NR96 1032 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 HSFX1Q9UBD0 423 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 IP6K2Q9UHH9 426 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 MTUS1Q9ULD2 1270 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 MAFFQ9ULX9 164 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 SSX2IPQ9Y2D8 614 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 HYOU1Q9Y4L1 999 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 YIPF1Q9Y548 306 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 IRAK3Q9Y616 596 aa6.95□□□□□ -1.3
USP48-208ENST00000479177 MTCL1Q9Y4B5 1905 aaKnown RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 FAM92AA1XBS5 289 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 C2orf71A6NGG8 1288 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 YJEFN3A6XGL0 299 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 E7ENQ6 273 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 GRM6O15303 877 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 SPOPO43791 374 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 GRAP2O75791 330 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 SEC24AO95486 1093 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 LTFP02788 710 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 GLI1P08151 1106 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CELA3AP09093 270 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 ATF2P15336 505 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 GPD1P21695 349 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 PSMA2P25787 234 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CTNNA2P26232 953 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 CTNNA1P35221 906 aaKnown RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 SLC1A1P43005 524 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 PTPN9P43378 593 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 MARCKSL1P49006 195 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 RGS19P49795 217 aa6.94□□□□□ -1.3
USP48-208ENST00000479177 ZNF143P52747 638 aaPredicted RBP6.94□□□□□ -1.3
USP48-208ENST00000479177 ERVFC1P60507 584 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms