RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 INHBCP55103 352 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 GPC5P78333 572 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 RAE1P78406 368 aaKnown RBP5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 TXNL4AP83876 142 aaKnown RBP5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 COL10A1Q03692 680 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 DPTQ07507 201 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 DNASE1L3Q13609 305 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 AKNAD1Q5T1N1 836 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 ATPAF1Q5TC12 328 aaPredicted RBP5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 C16orf89Q6UX73 402 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 SLC29A4Q7RTT9 530 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 KRT27Q7Z3Y8 459 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 TRABD2AQ86V40 505 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 SFTPA1Q8IWL2 248 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 PNPLA1Q8N8W4 532 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 CAGE1Q8TC20 777 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 WDR60Q8WVS4 1066 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 RUBCNQ92622 972 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 BBC3Q96PG8 261 aaPredicted RBP5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 AGAP2Q99490 1192 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 FAM167BQ9BTA0 163 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 DUSP26Q9BV47 211 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 VPS16Q9H269 839 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 IKZF4Q9H2S9 585 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 ASIC5Q9NY37 505 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 CNTN6Q9UQ52 1028 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 LRPPRCP42704 1394 aaKnown RBP5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 ABCC11Q96J66 1382 aa5.66□□□□□ -1.5
HMGB3P19-201ENST00000403971 CCDC187A0A096LP49 1063 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 CYR61O00622 381 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 RHOBTB3O94955 611 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 TMIGD3P0DMS9 266 aaPredicted RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 HSPA5P11021 654 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 APEHP13798 732 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 ZNF37AP17032 561 aaPredicted RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 GALNSP34059 522 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 CLK3P49761 638 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 TRIM60Q495X7 471 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 MTHFD1LQ6UB35 978 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 BCDIN3DQ7Z5W3 292 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 MOGAT3Q86VF5 341 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 TERB1Q8NA31 727 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 NGDNQ8NEJ9 315 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 MAFAQ8NHW3 353 aaPredicted RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 CSGALNACT1Q8TDX6 532 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 TBC1D5Q92609 795 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 NPIPB3Q92617 1050 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 REPS1Q96D71 796 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 EDC3Q96F86 508 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 UROC1Q96N76 676 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 ISCA1Q9BUE6 129 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 BRD8Q9H0E9 1235 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 CCDC134Q9H6E4 229 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 ELAC1Q9H777 363 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 SEPSECSQ9HD40 501 aaKnown RBP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 FBXO28Q9NVF7 368 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 SH3BP4Q9P0V3 963 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 SLC17A6Q9P2U8 582 aa5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.65□□□□□ -1.5
HMGB3P19-201ENST00000403971 NPHP4O75161 1426 aaPredicted RBP5.65□□□□□ -1.51
HMGB3P19-201ENST00000403971 FAM135BQ49AJ0 1406 aa5.65□□□□□ -1.51
HMGB3P19-201ENST00000403971 NWD1Q149M9 1564 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 ARHGEF17Q96PE2 2063 aaPredicted RBP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 LOC105369274A0A096LPK9 316 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 LOC102723532A0A0G2JNH3 316 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 GXYLT2A0PJZ3 443 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 B9A039 149 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 THBS4P35443 961 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 IGHMBP2P38935 993 aaKnown RBP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 POLE2P56282 527 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 FAM3BP58499 235 aaPredicted RBP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 CCDC15Q0P6D6 951 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 SF3A3Q12874 501 aaKnown RBP eCLIP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 CUL4BQ13620 913 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 ERCC6LQ2NKX8 1250 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 TMEM95Q3KNT9 176 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 C4orf46Q504U0 113 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 ANKRD40Q6AI12 368 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 ZNF804AQ7Z570 1209 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 ARHGEF25Q86VW2 580 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 OR4N4Q8N0Y3 316 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 CPXCR1Q8N123 301 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 C12orf76Q8N812 135 aaPredicted RBP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 FAM71DQ8N9W8 422 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 HMGB4Q8WW32 186 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 OVCA2Q8WZ82 227 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 RSC1A1Q92681 617 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 C3orf49Q96BT1 292 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 CHFRQ96EP1 664 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 TRAPPC9Q96Q05 1148 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 SNX18Q96RF0 628 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 TIMP4Q99727 224 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 PAAF1Q9BRP4 392 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 DDX23Q9BUQ8 820 aaKnown RBP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 PRDM13Q9H4Q3 707 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 TAF1DQ9H5J8 278 aaPredicted RBP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 SERGEFQ9UGK8 458 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 RAB21Q9UL25 225 aa5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 COL11A2P13942 1736 aaPredicted RBP5.64□□□□□ -1.51
HMGB3P19-201ENST00000403971 PTCH1Q13635 1447 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms