RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 AEBP2Q6ZN18 517 aaPredicted RBP23.79■■□□□ 1.4
HMGB3P19-201ENST00000403971 CHIC1Q5VXU3 224 aa23.46■■□□□ 1.35
HMGB3P19-201ENST00000403971 PHF23Q9BUL5 403 aaPredicted RBP20.73■□□□□ 0.91
HMGB3P19-201ENST00000403971 SENP3Q9H4L4 574 aaPredicted RBP20.03■□□□□ 0.8
HMGB3P19-201ENST00000403971 PLPPR3Q6T4P5 718 aa19.15■□□□□ 0.66
HMGB3P19-201ENST00000403971 FOXD1Q16676 465 aa18.63■□□□□ 0.57
HMGB3P19-201ENST00000403971 ADRA2BP18089 450 aa18.21■□□□□ 0.51
HMGB3P19-201ENST00000403971 PPP6R1Q9UPN7 881 aa18.21■□□□□ 0.51
HMGB3P19-201ENST00000403971 PIAS4Q8N2W9 510 aaPredicted RBP17.62■□□□□ 0.41
HMGB3P19-201ENST00000403971 KCNA4P22459 653 aa16.97■□□□□ 0.31
HMGB3P19-201ENST00000403971 MSH5O43196 834 aa16.96■□□□□ 0.31
HMGB3P19-201ENST00000403971 PPP4R3CPQ6ZMV5 832 aa16.96■□□□□ 0.31
HMGB3P19-201ENST00000403971 NCBP3Q53F19 620 aaKnown RBP16.53■□□□□ 0.24
HMGB3P19-201ENST00000403971 SCAF1Q9H7N4 1312 aaKnown RBP16.51■□□□□ 0.23
HMGB3P19-201ENST00000403971 MAPK8IP2Q13387 824 aaPredicted RBP16.45■□□□□ 0.22
HMGB3P19-201ENST00000403971 NPM3O75607 178 aaKnown RBP16.38■□□□□ 0.21
HMGB3P19-201ENST00000403971 CNKSR2Q8WXI2 1034 aa16.37■□□□□ 0.21
HMGB3P19-201ENST00000403971 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
HMGB3P19-201ENST00000403971 EHMT2Q96KQ7 1210 aa16.13■□□□□ 0.17
HMGB3P19-201ENST00000403971 DMRT2Q9Y5R5 561 aa16.06■□□□□ 0.16
HMGB3P19-201ENST00000403971 RNF216Q9NWF9 866 aaPredicted RBP15.97■□□□□ 0.15
HMGB3P19-201ENST00000403971 HOXD11P31277 338 aaPredicted RBP15.84■□□□□ 0.13
HMGB3P19-201ENST00000403971 CSRNP3Q8WYN3 585 aa15.78■□□□□ 0.12
HMGB3P19-201ENST00000403971 DNAJC5BQ9UF47 199 aa15.74■□□□□ 0.11
HMGB3P19-201ENST00000403971 ZBTB22O15209 634 aa15.64■□□□□ 0.09
HMGB3P19-201ENST00000403971 FOXD4L1Q9NU39 408 aa15.46■□□□□ 0.07
HMGB3P19-201ENST00000403971 SLC4A2P04920 1241 aa15.41■□□□□ 0.06
HMGB3P19-201ENST00000403971 DCAF8L1A6NGE4 600 aa15.4■□□□□ 0.06
HMGB3P19-201ENST00000403971 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.12■□□□□ 0.01
HMGB3P19-201ENST00000403971 MYCNP04198 464 aaPredicted RBP15.08■□□□□ 0
HMGB3P19-201ENST00000403971 POTEDQ86YR6 584 aa14.99□□□□□ -0.01
HMGB3P19-201ENST00000403971 U3KPZ7 1027 aaPredicted RBP14.94□□□□□ -0.02
HMGB3P19-201ENST00000403971 ATXN8OSP0DMR3 200 aa14.83□□□□□ -0.04
HMGB3P19-201ENST00000403971 ATF5Q9Y2D1 282 aaPredicted RBP14.76□□□□□ -0.05
HMGB3P19-201ENST00000403971 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.73□□□□□ -0.05
HMGB3P19-201ENST00000403971 HNRNPUL2Q1KMD3 747 aaKnown RBP14.73□□□□□ -0.05
HMGB3P19-201ENST00000403971 SAMD1Q6SPF0 538 aaPredicted RBP14.73□□□□□ -0.05
HMGB3P19-201ENST00000403971 RNF39Q9H2S5 420 aa14.61□□□□□ -0.07
HMGB3P19-201ENST00000403971 APLP2Q06481 763 aa14.48□□□□□ -0.09
HMGB3P19-201ENST00000403971 SPINK5Q9NQ38 1064 aaPredicted RBP14.46□□□□□ -0.09
HMGB3P19-201ENST00000403971 ZNF219Q9P2Y4 722 aaPredicted RBP14.42□□□□□ -0.1
HMGB3P19-201ENST00000403971 C1QBPQ07021 282 aaKnown RBP14.41□□□□□ -0.1
HMGB3P19-201ENST00000403971 TRHP20396 242 aaPredicted RBP14.37□□□□□ -0.11
HMGB3P19-201ENST00000403971 CAPN15O75808 1086 aa14.35□□□□□ -0.11
HMGB3P19-201ENST00000403971 FKBP8Q14318 412 aa14.23□□□□□ -0.13
HMGB3P19-201ENST00000403971 POLA2Q14181 598 aa14.19□□□□□ -0.14
HMGB3P19-201ENST00000403971 ABCB7O75027 752 aa14.15□□□□□ -0.14
HMGB3P19-201ENST00000403971 MKRN4PQ13434 485 aaPredicted RBP14.11□□□□□ -0.15
HMGB3P19-201ENST00000403971 DSG3P32926 999 aa14.03□□□□□ -0.16
HMGB3P19-201ENST00000403971 CACNB1Q02641 598 aaPredicted RBP14.02□□□□□ -0.17
HMGB3P19-201ENST00000403971 FBLN2P98095 1184 aa14□□□□□ -0.17
HMGB3P19-201ENST00000403971 SPDYE4A6NLX3 237 aa13.89□□□□□ -0.19
HMGB3P19-201ENST00000403971 ZBTB12Q9Y330 459 aaPredicted RBP13.87□□□□□ -0.19
HMGB3P19-201ENST00000403971 OSCARQ8IYS5 282 aa13.72□□□□□ -0.21
HMGB3P19-201ENST00000403971 PROM2Q8N271 834 aa13.68□□□□□ -0.22
HMGB3P19-201ENST00000403971 ZNF692Q9BU19 519 aaPredicted RBP13.6□□□□□ -0.23
HMGB3P19-201ENST00000403971 SPDYE2BA6NHP3 402 aa13.57□□□□□ -0.24
HMGB3P19-201ENST00000403971 SPDYE6P0CI01 402 aa13.57□□□□□ -0.24
HMGB3P19-201ENST00000403971 SPDYE2Q495Y8 402 aa13.57□□□□□ -0.24
HMGB3P19-201ENST00000403971 FBXO3Q9UK99 471 aa13.55□□□□□ -0.24
HMGB3P19-201ENST00000403971 SSUH2Q9Y2M2 353 aa13.53□□□□□ -0.24
HMGB3P19-201ENST00000403971 RTN4Q9NQC3 1192 aaKnown RBP13.52□□□□□ -0.25
HMGB3P19-201ENST00000403971 PABPN1Q86U42 306 aaKnown RBP eCLIP13.45□□□□□ -0.26
HMGB3P19-201ENST00000403971 AMER1Q5JTC6 1135 aaPredicted RBP13.44□□□□□ -0.26
HMGB3P19-201ENST00000403971 VASPP50552 380 aaPredicted RBP13.42□□□□□ -0.26
HMGB3P19-201ENST00000403971 IFNLR1Q8IU57 520 aaPredicted RBP13.29□□□□□ -0.28
HMGB3P19-201ENST00000403971 RBM42Q9BTD8 480 aaKnown RBP13.28□□□□□ -0.28
HMGB3P19-201ENST00000403971 STAG3Q9UJ98 1225 aa13.24□□□□□ -0.29
HMGB3P19-201ENST00000403971 AKT1S1Q96B36 256 aa13.21□□□□□ -0.29
HMGB3P19-201ENST00000403971 PLCD3Q8N3E9 789 aa13.15□□□□□ -0.3
HMGB3P19-201ENST00000403971 MIER1Q8N108 512 aa13.14□□□□□ -0.31
HMGB3P19-201ENST00000403971 REM2Q8IYK8 340 aaPredicted RBP13.13□□□□□ -0.31
HMGB3P19-201ENST00000403971 KLHL34Q8N239 644 aa13.12□□□□□ -0.31
HMGB3P19-201ENST00000403971 SPDYE1Q8NFV5 336 aaPredicted RBP13.1□□□□□ -0.31
HMGB3P19-201ENST00000403971 CLEC11AQ9Y240 323 aa13.09□□□□□ -0.31
HMGB3P19-201ENST00000403971 SPOCK2Q92563 424 aa13.03□□□□□ -0.32
HMGB3P19-201ENST00000403971 PITPNM1O00562 1244 aa12.99□□□□□ -0.33
HMGB3P19-201ENST00000403971 PRR29P0C7W0 189 aa12.98□□□□□ -0.33
HMGB3P19-201ENST00000403971 PLEKHG5O94827 1062 aa12.97□□□□□ -0.33
HMGB3P19-201ENST00000403971 PKD2Q13563 968 aa12.97□□□□□ -0.33
HMGB3P19-201ENST00000403971 CREBZFQ9NS37 354 aa12.92□□□□□ -0.34
HMGB3P19-201ENST00000403971 ZBTB47Q9UFB7 747 aaPredicted RBP12.9□□□□□ -0.34
HMGB3P19-201ENST00000403971 MNX1P50219 401 aaPredicted RBP12.83□□□□□ -0.36
HMGB3P19-201ENST00000403971 ECM2O94769 699 aaPredicted RBP12.81□□□□□ -0.36
HMGB3P19-201ENST00000403971 CIZ1Q9ULV3 898 aaPredicted RBP12.81□□□□□ -0.36
HMGB3P19-201ENST00000403971 DCAF8L2P0C7V8 631 aa12.79□□□□□ -0.36
HMGB3P19-201ENST00000403971 NUBP1P53384 320 aa12.78□□□□□ -0.36
HMGB3P19-201ENST00000403971 CHADLQ6NUI6 762 aa12.78□□□□□ -0.36
HMGB3P19-201ENST00000403971 RGL2O15211 777 aa12.71□□□□□ -0.37
HMGB3P19-201ENST00000403971 DCAF8Q5TAQ9 597 aa12.69□□□□□ -0.38
HMGB3P19-201ENST00000403971 RASEFQ8IZ41 740 aa12.69□□□□□ -0.38
HMGB3P19-201ENST00000403971 CHRDL2Q6WN34 429 aa12.67□□□□□ -0.38
HMGB3P19-201ENST00000403971 SLC24A1O60721 1099 aa12.66□□□□□ -0.38
HMGB3P19-201ENST00000403971 PRKAR2AP13861 404 aaKnown RBP12.66□□□□□ -0.38
HMGB3P19-201ENST00000403971 GSE1Q14687 1217 aa12.66□□□□□ -0.38
HMGB3P19-201ENST00000403971 FXR2P51116 673 aaKnown RBP eCLIP12.65□□□□□ -0.38
HMGB3P19-201ENST00000403971 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
HMGB3P19-201ENST00000403971 FAM212AQ96EL1 285 aa12.63□□□□□ -0.39
HMGB3P19-201ENST00000403971 FARP1Q9Y4F1 1045 aaPredicted RBP12.63□□□□□ -0.39
HMGB3P19-201ENST00000403971 PIP4P2Q8N4L2 257 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms