RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CLDN11O75508 207 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 DDHD2O94830 711 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 E4F1Q66K89 784 aaPredicted RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 TMEM192Q8IY95 271 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 FUCA2Q9BTY2 467 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 PRKD2Q9BZL6 878 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 PSMC3IPQ9P2W1 217 aaPredicted RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 LNPEPQ9UIQ6 1025 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 RPN2P04844 631 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 MTHFRP42898 656 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 SLC25A52Q3SY17 297 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 GLT6D1Q7Z4J2 308 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 SPATS2Q86XZ4 545 aaKnown RBP10.42□□□□□ -0.74
USP54-201ENST00000339859 KATNAL2Q8IYT4 538 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 PCED1BQ96HM7 432 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 FLRT1Q9NZU1 646 aa10.42□□□□□ -0.74
USP54-201ENST00000339859 CTSEP14091 401 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 NPY2RP49146 381 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 SLC11A1P49279 550 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 NOMO3P69849 1222 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 KDSRQ06136 332 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 CCDC33Q8N5R6 958 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 ZSWIM2Q8NEG5 633 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 POF1BQ8WVV4 589 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 AHCYL2Q96HN2 611 aaKnown RBP10.41□□□□□ -0.74
USP54-201ENST00000339859 WDR24Q96S15 920 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 SLC13A1Q9BZW2 595 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 L1RE1Q9UN81 338 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 NAALADL1Q9UQQ1 740 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 PCDHA3Q9Y5H8 950 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 ZNF839A8K0R7 811 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 RPL17P18621 184 aaKnown RBP10.41□□□□□ -0.74
USP54-201ENST00000339859 SPIRE1Q08AE8 756 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 CDH17Q12864 832 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 ANGPTL8Q6UXH0 198 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 SZRD1Q7Z422 152 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 FAM161BQ96MY7 647 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.41□□□□□ -0.74
USP54-201ENST00000339859 PTPRJQ12913 1337 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 ADGRA3Q8IWK6 1321 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 SEC31AO94979 1220 aaKnown RBP10.41□□□□□ -0.74
USP54-201ENST00000339859 ANP32DO95626 131 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 HALP42357 657 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 MAGEA4P43358 317 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 PTK2BQ14289 1009 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 FSCBQ5H9T9 825 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 GRIN3AQ8TCU5 1115 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 ACTRT1Q8TDG2 376 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 PCYT2Q99447 389 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 PDE2AO00408 941 aaPredicted RBP10.41□□□□□ -0.74
USP54-201ENST00000339859 SOAT2O75908 522 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 NCF2P19878 526 aaPredicted RBP10.41□□□□□ -0.74
USP54-201ENST00000339859 ERVK-21P61565 698 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 SLC35G1Q2M3R5 365 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 LRRC38Q5VT99 294 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 CHST9Q7L1S5 443 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 OSGEPL1Q9H4B0 414 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 GNEQ9Y223 722 aaKnown RBP10.41□□□□□ -0.74
USP54-201ENST00000339859 MYH8P13535 1937 aa10.41□□□□□ -0.74
USP54-201ENST00000339859 LRRC10BA6NIK2 292 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 TRDMT1O14717 391 aaKnown RBP10.4□□□□□ -0.74
USP54-201ENST00000339859 OR56A5P0C7T3 313 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 IFNA8P32881 189 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 MAML1Q92585 1016 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 ERVK-5Q9HDB9 667 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 POLMQ9NP87 494 aaPredicted RBP10.4□□□□□ -0.74
USP54-201ENST00000339859 SFMBT1Q9UHJ3 866 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 PCDHGC3Q9UN70 934 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 RB1P06400 928 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 KDELR1P24390 212 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 UBE3AQ05086 875 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 CASP8Q14790 479 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 MORF4L2Q15014 288 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 C15orf59Q2T9L4 293 aaPredicted RBP10.4□□□□□ -0.74
USP54-201ENST00000339859 NUDCD3Q8IVD9 361 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 PHOSPHO2Q8TCD6 241 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 ERP44Q9BS26 406 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 HAUS8Q9BT25 410 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 WHRNQ9P202 907 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 YIPF1Q9Y548 306 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 ESYT3A0FGR9 886 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 GPR32O75388 356 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 PRLRP16471 622 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 AARSP49588 968 aaKnown RBP eCLIP10.4□□□□□ -0.74
USP54-201ENST00000339859 VCPP55072 806 aaKnown RBP10.4□□□□□ -0.74
USP54-201ENST00000339859 FMO1Q01740 532 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 PRKCQQ04759 706 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 RFX8Q6ZV50 586 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 STRADAQ7RTN6 431 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 HOMEZQ8IX15 550 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 UPF3AQ9H1J1 476 aaKnown RBP10.4□□□□□ -0.74
USP54-201ENST00000339859 TASP1Q9H6P5 420 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 DYRK1BQ9Y463 629 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 SPACA6W5XKT8 324 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 MAP3K6O95382 1288 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 NUMBP49757 651 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 RAD23BP54727 409 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 KCNMA1Q12791 1236 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 PRKAA1Q13131 559 aa10.4□□□□□ -0.74
USP54-201ENST00000339859 CAMK2GQ13555 558 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms