RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 UBXN8O00124 270 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 PHGDHO43175 533 aaKnown RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 PDE5AO76074 875 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 RECQL4O94761 1208 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 FMO4P31512 558 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 CLK2P49760 499 aaKnown RBP11.72□□□□□ -0.53
USP53-201ENST00000274030 TGFB2P61812 414 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 IL5RAQ01344 420 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 GLT6D1Q7Z4J2 308 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 ULBP1Q9BZM6 244 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 FBXO44Q9H4M3 255 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 CCDC167Q9P0B6 97 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 RAD54BQ9Y620 910 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 NRXN1Q9ULB1 1477 aa11.72□□□□□ -0.53
USP53-201ENST00000274030 MOXD2PA6NHM9 499 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 IFRD1O00458 451 aaPredicted RBP11.71□□□□□ -0.53
USP53-201ENST00000274030 GCNT1Q02742 428 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 PPP3CAQ08209 521 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 GRIK5Q16478 980 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 PRAMEF19Q5SWL8 479 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 NPNTQ6UXI9 565 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 BRSK2Q8IWQ3 736 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 ZSCAN18Q8TBC5 510 aaPredicted RBP11.71□□□□□ -0.53
USP53-201ENST00000274030 AGXT2Q9BYV1 514 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 DMAP1Q9NPF5 467 aaPredicted RBP11.71□□□□□ -0.53
USP53-201ENST00000274030 CYP39A1Q9NYL5 469 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 PIAS1O75925 651 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 PTPN4P29074 926 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 SAMD3Q8N6K7 520 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 KYQ8NBH2 561 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 CAVIN3Q969G5 261 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 DCLRE1BQ9H816 532 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 FAM50BQ9Y247 325 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 FCHO1O14526 889 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 MAP3K13O43283 966 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 SEC22BO75396 215 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 TMED10P49755 219 aaKnown RBP11.71□□□□□ -0.53
USP53-201ENST00000274030 SLC6A3Q01959 620 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 ZNF844Q08AG5 666 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 TRIM16LQ309B1 348 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 METTL6Q8TCB7 284 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 TMEM159Q96B96 161 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 TPD52L3Q96J77 140 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 ABHD16BQ9H3Z7 469 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 ASB7Q9H672 318 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 PCDHAC2Q9Y5I4 1007 aa11.71□□□□□ -0.53
USP53-201ENST00000274030 SLCO1B7G3V0H7 640 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 BTN3A1O00481 513 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 KPNA3O00505 521 aaPredicted RBP11.71□□□□□ -0.54
USP53-201ENST00000274030 ACVR2BQ13705 512 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 TYW3Q6IPR3 259 aaKnown RBP11.71□□□□□ -0.54
USP53-201ENST00000274030 MTSS1LQ765P7 747 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 ADAM2Q99965 735 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 TMEM79Q9BSE2 394 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 KLHL4Q9C0H6 718 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 RXFP1Q9HBX9 757 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 RPS6KB2Q9UBS0 482 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 ADAMTS13Q76LX8 1427 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 DCXO43602 365 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 CBX6O95503 412 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 ANXA11P50995 505 aaKnown RBP11.71□□□□□ -0.54
USP53-201ENST00000274030 CASP7P55210 303 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 PLD1Q13393 1074 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 ACOX1Q15067 660 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 CAMKK2Q96RR4 588 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 IGFLR1Q9H665 355 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 IPPQ9Y573 584 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 FRMPD4Q14CM0 1322 aa11.71□□□□□ -0.54
USP53-201ENST00000274030 REREQ9P2R6 1566 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 RBAK-RBAKDNI3L0D1 243 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 TRIM13O60858 407 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 SKIV2L2P42285 1042 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 PSEN2P49810 448 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 DACT2Q5SW24 774 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 PALB2Q86YC2 1186 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 SLC22A9Q8IVM8 553 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 MPP6Q9NZW5 540 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 NKRFO15226 690 aaKnown RBP eCLIP11.7□□□□□ -0.54
USP53-201ENST00000274030 KRT6AP02538 564 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 KRT6BP04259 564 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 MPOP05164 745 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 MAPTP10636 758 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 TNNI3P19429 210 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 KRT6CP48668 564 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 FSCN1Q16658 493 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 CDHR5Q9HBB8 845 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 TMEM39AQ9NV64 488 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 SALL3Q9BXA9 1300 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 TNS2Q63HR2 1409 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 MAGEB16A2A368 324 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 SERPINE1P05121 402 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 PGAM1P18669 254 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 ADRA1DP25100 572 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 ELAVL2Q12926 359 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 FASTKQ14296 549 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 KPNB1Q14974 876 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 ATP13A4Q4VNC1 1196 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 GRTP1Q5TC63 336 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 ITIH5Q86UX2 942 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 HEATR4Q86WZ0 1026 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms