RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 ITGA2P17301 1181 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 HLA-DPA1P20036 260 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FAM133BQ5BKY9 247 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 IRAK1BP1Q5VVH5 260 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 C1orf54Q8WWF1 131 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 KAZALD1Q96I82 304 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SEC16BQ96JE7 1060 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FUCA2Q9BTY2 467 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PNMA8CA0A1B0GUJ8 204 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 XPO1O14980 1071 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FTH1P02794 183 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 INSRRP14616 1297 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 TOB1P50616 345 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CLCN2P51788 898 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 DUSP28Q4G0W2 176 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ANGPTL8Q6UXH0 198 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CERS6Q6ZMG9 384 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ADAMTSL2Q86TH1 951 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SAMD14Q8IZD0 417 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SLC30A5Q8TAD4 765 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 HTR3CQ8WXA8 447 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ZNF669Q96BR6 464 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 RIBC2Q9H4K1 309 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PRDM8Q9NQV8 689 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PCDHB1Q9Y5F3 818 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 MOXD2PA6NHM9 499 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 RAD51CO43502 376 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ADH1CP00326 375 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CYP2F1P24903 491 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 HALP42357 657 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 RAP1GDS1P52306 607 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 USP41Q3LFD5 358 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 MTX3Q5HYI7 312 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PCID2Q5JVF3 399 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 TSHZ1Q6ZSZ6 1077 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 WDR60Q8WVS4 1066 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SLC25A23Q9BV35 468 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SLC39A10Q9ULF5 831 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ADORA2AP29274 412 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 YBEYP58557 167 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PTGISQ16647 500 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CYP2A13Q16696 494 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ATP6AP1LQ52LC2 224 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FAM98BQ52LJ0 330 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 DENND1BQ6P3S1 775 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 MON1AQ86VX9 555 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SPATA20Q8TB22 786 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ZNF558Q96NG5 402 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 COPS7BQ9H9Q2 264 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 MRTO4Q9UKD2 239 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PP2D1A8MPX8 630 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 DNALI1O14645 258 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SLITRK3O94933 977 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ALBP02768 609 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FRG1Q14331 258 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 NCF4Q15080 339 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 TRIP13Q15645 432 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PTPN21Q16825 1174 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CHADLQ6NUI6 762 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PIWIL4Q7Z3Z4 852 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ZNF473Q8WTR7 871 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FAM172AQ8WUF8 416 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FAM162AQ96A26 154 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PABPC5Q96DU9 382 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ZFP42Q96MM3 310 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FAM161BQ96MY7 647 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CROTQ9UKG9 612 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 LAMB1P07942 1786 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 NPHP3-ACAD11A0A0J9YXS1 232 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 MYO1CO00159 1063 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 WWP2O00308 870 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FOXN3O00409 490 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PFDN1O60925 122 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 HSD17B3P37058 310 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 DSG1Q02413 1049 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PCDHGB3Q9Y5G1 929 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SRGAP2O75044 1071 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SOX30O94993 753 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ALOX15P16050 662 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 TYMPP19971 482 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PTPN7P35236 360 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CCNG1P51959 295 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 BNIP2Q12982 314 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 KRT78Q8N1N4 520 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 TMEM132CQ8N3T6 1108 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ZNF606Q8WXB4 792 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 PLD4Q96BZ4 506 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FUBP3Q96I24 572 aaKnown RBP eCLIP4.41□□□□□ -1.72e-7■□□□□ 9.9
VPS13C-202ENST00000261517 SAMD11Q96NU1 681 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 MRPL57Q9BQC6 102 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 RBM12Q9NTZ6 932 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 AGPAT5Q9NUQ2 364 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 FKTNO75072 461 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CNOT3O75175 753 aaKnown RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 MBL2P11226 248 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 DMC1Q14565 340 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 ARID5BQ14865 1188 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 CES5AQ6NT32 575 aa4.41□□□□□ -1.7
VPS13C-202ENST00000261517 BNC2Q6ZN30 1099 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-202ENST00000261517 SHC3Q92529 594 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms