RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 CTIFO43310 598 aaKnown RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 PRAMEF2O60811 474 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 PPP6R2O75170 966 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 RPP40O75818 363 aaKnown RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 LARGE1O95461 756 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 CELA2AP08217 269 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 CYP2D6P10635 497 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 EPHB2P29323 1055 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 GALNSP34059 522 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 IGHMBP2P38935 993 aaKnown RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 AARSP49588 968 aaKnown RBP eCLIP4.68□□□□□ -1.66
CLK1-208ENST00000464454 CDK7P50613 346 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 WDR5P61964 334 aaKnown RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 ZNF268Q14587 947 aaPredicted RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 TAF12Q16514 161 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 PFKFB3Q16875 520 aaPredicted RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 BTBD16Q32M84 506 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 ALFQ53S48 1182 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 ZNF569Q5MCW4 686 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 FBXO47Q5MNV8 452 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 MIS18BP1Q6P0N0 1132 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 RANBP10Q6VN20 620 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 ZNF66Q6ZN08 573 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 PIK3AP1Q6ZUJ8 805 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 KRT27Q7Z3Y8 459 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 GALNT16Q8N428 558 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 OR52L2PQ8NGH6 319 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 CPT1BQ92523 772 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 C3orf49Q96BT1 292 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 KAZALD1Q96I82 304 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 UBXN10Q96LJ8 280 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 C5orf34Q96MH7 638 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 FAM118BQ9BPY3 351 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 SAP30LQ9HAJ7 183 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 NRIP3Q9NQ35 241 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 FBXO28Q9NVF7 368 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 C9orf78Q9NZ63 289 aaPredicted RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 DAPP1Q9UN19 280 aa4.68□□□□□ -1.66
CLK1-208ENST00000464454 UBE2J1Q9Y385 318 aaPredicted RBP4.68□□□□□ -1.66
CLK1-208ENST00000464454 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.67□□□□□ -1.66
CLK1-208ENST00000464454 KIF28PB7ZC32 967 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 H0Y3Z8 333 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 EIF3FO00303 357 aaPredicted RBP4.67□□□□□ -1.66
CLK1-208ENST00000464454 DSCR3O14972 297 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 USP12O75317 370 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 ATF7P17544 494 aaPredicted RBP4.67□□□□□ -1.66
CLK1-208ENST00000464454 RAE1P78406 368 aaKnown RBP4.67□□□□□ -1.66
CLK1-208ENST00000464454 POU5F1BQ06416 359 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 CUL4BQ13620 913 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 EFR3AQ14156 821 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 CNGA3Q16281 694 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 SRSF7Q16629 238 aaKnown RBP eCLIP4.67□□□□□ -1.66
CLK1-208ENST00000464454 COLEC12Q5KU26 742 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 ANO7Q6IWH7 933 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 RRAGAQ7L523 313 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 NEK8Q86SG6 692 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 PAF1Q8N7H5 531 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 ZNF398Q8TD17 642 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 PNISRQ8TF01 805 aaKnown RBP4.67□□□□□ -1.66
CLK1-208ENST00000464454 SLC22A17Q8WUG5 538 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 AFG1LQ8WV93 481 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 HMGB4Q8WW32 186 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 GLMPQ8WWB7 406 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 THAP4Q8WY91 577 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 VOPP1Q96AW1 172 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 FAR2Q96K12 515 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 TBATAQ96M53 351 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 NAP1L4Q99733 375 aaKnown RBP4.67□□□□□ -1.66
CLK1-208ENST00000464454 EFHD1Q9BUP0 239 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 CCDC134Q9H6E4 229 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 ABHD10Q9NUJ1 306 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 SAGE1Q9NXZ1 904 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 RRN3Q9NYV6 651 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 NDUFAF4Q9P032 175 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 PCDHB7Q9Y5E2 793 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 PCDHB2Q9Y5E7 798 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 LRRFIP2Q9Y608 721 aaKnown RBP4.67□□□□□ -1.66
CLK1-208ENST00000464454 WDR17Q8IZU2 1322 aa4.67□□□□□ -1.66
CLK1-208ENST00000464454 GXYLT2A0PJZ3 443 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 CGB1A6NKQ9 187 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 B9A039 149 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 MBPP02686 304 aaPredicted RBP4.66□□□□□ -1.66
CLK1-208ENST00000464454 TACR3P29371 465 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 SERPINA4P29622 427 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 PAPOLAP51003 745 aaKnown RBP4.66□□□□□ -1.66
CLK1-208ENST00000464454 PRKAA2P54646 552 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 ACTR2P61160 394 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 SF3A3Q12874 501 aaKnown RBP eCLIP4.66□□□□□ -1.66
CLK1-208ENST00000464454 GLE1Q53GS7 698 aaKnown RBP4.66□□□□□ -1.66
CLK1-208ENST00000464454 TTC22Q5TAA0 569 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 ACSM6Q6P461 480 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 OSR1Q8TAX0 266 aaPredicted RBP4.66□□□□□ -1.66
CLK1-208ENST00000464454 DDB2Q92466 427 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 MCRS1Q96EZ8 462 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 REXO5Q96IC2 774 aaKnown RBP4.66□□□□□ -1.66
CLK1-208ENST00000464454 PYM1Q9BRP8 204 aaKnown RBP4.66□□□□□ -1.66
CLK1-208ENST00000464454 NUAK2Q9H093 628 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 LIN7CQ9NUP9 197 aaKnown RBP4.66□□□□□ -1.66
CLK1-208ENST00000464454 ARL8BQ9NVJ2 186 aa4.66□□□□□ -1.66
CLK1-208ENST00000464454 SEMA5BQ9P283 1151 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms