RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 SASS6Q6UVJ0 657 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 ASCL5Q7RTU5 278 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 MIB1Q86YT6 1006 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 SIX6OS1Q8N1H7 587 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 IRGQQ8WZA9 623 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 EXOC4Q96A65 974 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 P2RY11Q96G91 374 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 NAA15Q9BXJ9 866 aaKnown RBP11.73□□□□□ -0.53
SMAD4-211ENST00000590499 FAM126AQ9BYI3 521 aaPredicted RBP11.73□□□□□ -0.53
SMAD4-211ENST00000590499 HSD3B7Q9H2F3 369 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 SPHK2Q9NRA0 654 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 ZSCAN32Q9NX65 697 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 TAB2Q9NYJ8 693 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 MARK1Q9P0L2 795 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 MARCH2Q9P0N8 246 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 CYTH4Q9UIA0 394 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 DNAJC12Q9UKB3 198 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 PCDHGA2Q9Y5H1 932 aa11.73□□□□□ -0.53
SMAD4-211ENST00000590499 A0A0A0MRY4 1105 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 K7EQS6 105 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 FOXN3O00409 490 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-211ENST00000590499 MED7O43513 233 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 LILRA1O75019 489 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 LETM1O95202 739 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-211ENST00000590499 LCP1P13796 627 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 ZNF18P17022 549 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 HOXA6P31267 233 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 HOXC13P31276 330 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 COG7P83436 770 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 MYL5Q02045 173 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 GAD2Q05329 585 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 KRT31Q15323 416 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 KLHDC7AQ5VTJ3 777 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 MSANTD2Q6P1R3 559 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 ZC3H14Q6PJT7 736 aaKnown RBP11.72□□□□□ -0.53
SMAD4-211ENST00000590499 TMEM25Q86YD3 366 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 SFTPA1Q8IWL2 248 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 FAM71AQ8IYT1 594 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 VWA5B2Q8N398 1253 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 CLEC4CQ8WTT0 213 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 STK32AQ8WU08 396 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 NKD2Q969F2 451 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-211ENST00000590499 SCARF2Q96GP6 870 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-211ENST00000590499 SEMA4AQ9H3S1 761 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 ZNF395Q9H8N7 513 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-211ENST00000590499 FANCLQ9NW38 375 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 RASAL2Q9UJF2 1139 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 LSM7Q9UK45 103 aaKnown RBP11.72□□□□□ -0.53
SMAD4-211ENST00000590499 FHOD1Q9Y613 1164 aa11.72□□□□□ -0.53
SMAD4-211ENST00000590499 ANTXRLA6NF34 631 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 PIK3R2O00459 728 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 THAP12O43422 761 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 CACNG3O60359 315 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 FBXO21O94952 628 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 FYNP06241 537 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 PNMA6AP0CW24 399 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 CTSOP43234 321 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 TYRO3Q06418 890 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 DMWDQ09019 674 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 TRIP4Q15650 581 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 BTBD8Q5XKL5 378 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 RSRC2Q7L4I2 434 aaKnown RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 APTXQ7Z2E3 356 aaKnown RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 TMEM110Q86TL2 294 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 FAM217AQ8IXS0 508 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 WDTC1Q8N5D0 677 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 USP33Q8TEY7 942 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 EDEM1Q92611 657 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 PNKPQ96T60 521 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 INSM2Q96T92 566 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 GANQ9H2C0 597 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 PLCB1Q9NQ66 1216 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 ABCC13Q9NSE7 274 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 OLA1Q9NTK5 396 aaKnown RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 LIMA1Q9UHB6 759 aaKnown RBP11.71□□□□□ -0.53
SMAD4-211ENST00000590499 STRIP2Q9ULQ0 834 aa11.71□□□□□ -0.53
SMAD4-211ENST00000590499 SPTBN4Q9H254 2564 aa11.71□□□□□ -0.54
SMAD4-211ENST00000590499 SDK1Q7Z5N4 2213 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 SLC12A8A0AV02 714 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 LRRC10BA6NIK2 292 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 GFRA2O00451 464 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 PAPSS1O43252 624 aaPredicted RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 ATG13O75143 517 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 TULP3O75386 442 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 KAT7O95251 611 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 IGLV3-27P01718 113 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 LTFP02788 710 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 HMBSP08397 361 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 UCHL3P15374 230 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 CORO1AP31146 461 aaKnown RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 USP8P40818 1118 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 ACADSBP45954 432 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 PDCLQ13371 301 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 PPP2R5DQ14738 602 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 DRAP1Q14919 205 aaPredicted RBP11.7□□□□□ -0.54
SMAD4-211ENST00000590499 BEND5Q7L4P6 421 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 SLC47A2Q86VL8 602 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 FMNL3Q8IVF7 1028 aa11.7□□□□□ -0.54
SMAD4-211ENST00000590499 SUMF1Q8NBK3 374 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms