RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 OSR1Q8TAX0 266 aaPredicted RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 ZNF398Q8TD17 642 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 NPIPB3Q92617 1050 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 RSC1A1Q92681 617 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 FAR2Q96K12 515 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 RTKNQ9BST9 563 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 QTRT1Q9BXR0 403 aaKnown RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 RNF26Q9BY78 433 aaPredicted RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 CDCP1Q9H5V8 836 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 HERC5Q9UII4 1024 aaKnown RBP5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 NFU1Q9UMS0 254 aa5.21□□□□□ -1.58
SMCHD1-204ENST00000581226 CGB1A6NKQ9 187 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 KIF28PB7ZC32 967 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 M0QYT0 321 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 ACKR2O00590 384 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 PRYO14603 147 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 DSCR3O14972 297 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 EPHB2P29323 1055 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 THBS4P35443 961 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 CHKAP35790 457 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 POLE2P56282 527 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 SEC23BQ15437 767 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 SRSF7Q16629 238 aaKnown RBP eCLIP5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 AAK1Q2M2I8 961 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 TUBB8Q3ZCM7 444 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 FAM83BQ5T0W9 1011 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 KLHL17Q6TDP4 642 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 CCDC117Q8IWD4 279 aaPredicted RBP5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 SRRM1Q8IYB3 904 aaKnown RBP5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 CACNA2D3Q8IZS8 1091 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 GALNT16Q8N428 558 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 REXO5Q96IC2 774 aaKnown RBP5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 ELOVL1Q9BW60 279 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 CCDC134Q9H6E4 229 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 ASNSD1Q9NWL6 643 aa5.2□□□□□ -1.58
SMCHD1-204ENST00000581226 LOC105369274A0A096LPK9 316 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 LOC102723532A0A0G2JNH3 316 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 hCG_1642624A0A1W2PR95 340 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 C16orf96A6NNT2 1141 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 PPP6R2O75170 966 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 ACTL6BO94805 426 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 NDUFS1P28331 727 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 TACR3P29371 465 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 SLC8A1P32418 973 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 HOXD12P35452 270 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 PDCD2Q16342 344 aaPredicted RBP5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 FAM110CQ1W6H9 321 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 SULT6B1Q6IMI4 303 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 SLC18B1Q6NT16 456 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 YTHDF3Q7Z739 585 aaKnown RBP5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 CNGA4Q8IV77 575 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 OR4N4Q8N0Y3 316 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 MAP4K1Q92918 833 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 BRD8Q9H0E9 1235 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 MAGEH1Q9H213 219 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 PTPRHQ9HD43 1115 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 KCNK9Q9NPC2 374 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 KLHL13Q9P2N7 655 aa5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 SIRT4Q9Y6E7 314 aaPredicted RBP5.19□□□□□ -1.58
SMCHD1-204ENST00000581226 SMIM35A0A1B0GVV1 85 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 NKX2-8O15522 239 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 PRR35P0CG20 571 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 SFPQP23246 707 aaKnown RBP eCLIP5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 KELP23276 732 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 STAT6P42226 847 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 ARHGAP25P42331 645 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 ABCG1P45844 678 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 AP2B1P63010 937 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 SF3A3Q12874 501 aaKnown RBP eCLIP5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 GRAMD1BQ3KR37 738 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 SUPT20HL1Q3ZLR7 823 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 TRIM60Q495X7 471 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 COLEC12Q5KU26 742 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 LIN54Q6MZP7 749 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 WDR93Q6P2C0 686 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 NEK8Q86SG6 692 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 SLC44A2Q8IWA5 706 aaPredicted RBP5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 LAS2Q8IYD9 372 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 MYCT1Q8N699 235 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 SCAMP5Q8TAC9 235 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 HMGB4Q8WW32 186 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 ASB12Q8WXK4 309 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 FAM118BQ9BPY3 351 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 PAGR1Q9BTK6 254 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 MECRQ9BV79 373 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 SORBS1Q9BX66 1292 aaKnown RBP5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 PABPC3Q9H361 631 aaKnown RBP5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 MLXIPQ9HAP2 919 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 NRIP3Q9NQ35 241 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 GRHPRQ9UBQ7 328 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 RAB21Q9UL25 225 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 SLC12A4Q9UP95 1085 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 CNTN6Q9UQ52 1028 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 ZBTB1Q9Y2K1 713 aa5.18□□□□□ -1.58
SMCHD1-204ENST00000581226 FAM90A18PA6NE21 464 aa5.17□□□□□ -1.58
SMCHD1-204ENST00000581226 FAM90A16PA6NEW6 464 aa5.17□□□□□ -1.58
SMCHD1-204ENST00000581226 FAM90A9PA6NNJ1 464 aa5.17□□□□□ -1.58
SMCHD1-204ENST00000581226 EFCAB8A8MWE9 144 aa5.17□□□□□ -1.58
SMCHD1-204ENST00000581226 FAM90A5PA8MXJ8 464 aa5.17□□□□□ -1.58
SMCHD1-204ENST00000581226 RRHO14718 337 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms