RNA–Protein interactions for RNA: ENST00000561817.5

CAPN3-210, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-210ENST00000561817 WDR6Q9NNW5 1121 aaKnown RBP6.8□□□□□ -1.32
CAPN3-210ENST00000561817 PNPLA8Q9NP80 782 aa6.8□□□□□ -1.32
CAPN3-210ENST00000561817 CNGB3Q9NQW8 809 aa6.8□□□□□ -1.32
CAPN3-210ENST00000561817 TMEM39AQ9NV64 488 aa6.8□□□□□ -1.32
CAPN3-210ENST00000561817 GPATCH2LQ9NWQ4 482 aa6.8□□□□□ -1.32
CAPN3-210ENST00000561817 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.8□□□□□ -1.32
CAPN3-210ENST00000561817 WHRNQ9P202 907 aa6.8□□□□□ -1.32
CAPN3-210ENST00000561817 UTP11Q9Y3A2 253 aaKnown RBP6.8□□□□□ -1.32
CAPN3-210ENST00000561817 PCDHB7Q9Y5E2 793 aa6.8□□□□□ -1.32
CAPN3-210ENST00000561817 PTPRSQ13332 1948 aa6.8□□□□□ -1.32
CAPN3-210ENST00000561817 PDE4DIPQ5VU43 2346 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PLXNA3P51805 1871 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 CCDC189A1A4V9 331 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 APOC4-APOC2K7ER74 178 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PRPSAP2O60256 369 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 CST8O60676 142 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 IGLV3-25P01717 112 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 APOC2P02655 101 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 AMHP03971 560 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ITGAVP06756 1048 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 GALTP07902 379 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 OR4Q2P0C623 313 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 RAG1P15918 1043 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ITGB8P26012 769 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 GBP1P32455 592 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 HSD17B3P37058 310 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 CETN2P41208 172 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 TNNT3P45378 269 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 OR1G1P47890 313 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PGFP49763 221 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 CDH6P55285 790 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 OTUD4Q01804 1114 aaKnown RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 YWHAHQ04917 246 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 SEMA3BQ13214 749 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 BYSLQ13895 437 aaKnown RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PDK2Q15119 407 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 MAPRE1Q15691 268 aaKnown RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 CDO1Q16878 200 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 SPDYCQ5MJ68 293 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 UBAP2Q5T6F2 1119 aaKnown RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ALS2CLQ60I27 953 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 RSPO2Q6UXX9 243 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PRUNE1Q86TP1 453 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 TMEM173Q86WV6 379 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PSTKQ8IV42 348 aaKnown RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 THEM5Q8N1Q8 247 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 CCDC185Q8N715 623 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PLD5Q8N7P1 536 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 KCTD6Q8NC69 237 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ADAM32Q8TC27 787 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ACTL9Q8TC94 416 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 GRK7Q8WTQ7 553 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 HSPH1Q92598 858 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ZIM3Q96PE6 472 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ZNF670Q9BS34 389 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 VN1R3Q9BXE9 311 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 TRIM31Q9BZY9 425 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 CWH43Q9H720 699 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 RC3H2Q9HBD1 1191 aaKnown RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 POPDC2Q9HBU9 364 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 LRRC4Q9HBW1 653 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 NGRNQ9NPE2 291 aaKnown RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 DMAP1Q9NPF5 467 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ANLNQ9NQW6 1124 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 IL37Q9NZH6 218 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 SAE1Q9UBE0 346 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 RASAL2Q9UJF2 1139 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 FBXO9Q9UK97 447 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 ADAM28Q9UKQ2 775 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 FZD10Q9ULW2 581 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 NAALADL1Q9UQQ1 740 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 PRG3Q9Y2Y8 225 aaPredicted RBP6.79□□□□□ -1.32
CAPN3-210ENST00000561817 NR2E3Q9Y5X4 410 aa6.79□□□□□ -1.32
CAPN3-210ENST00000561817 FAM92AA1XBS5 289 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 TRIM43BA6NCK2 446 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 OR6C75A6NL08 312 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 KIAA0355O15063 1070 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 DGKIO75912 1065 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 ZBED1O96006 694 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 KRT14P02533 472 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 LTFP02788 710 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 USP17L7P0C7H9 530 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 ZSCAN5DPP0CG00 497 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 ETS1P14921 441 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 CAPN2P17655 700 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 ITIH2P19823 946 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 CYP2F1P24903 491 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 MAPK1P28482 360 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 OAS2P29728 719 aaKnown RBP6.78□□□□□ -1.32
CAPN3-210ENST00000561817 DNAJA1P31689 397 aaKnown RBP6.78□□□□□ -1.32
CAPN3-210ENST00000561817 RFC2P35250 354 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 MAGEA11P43364 429 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 CXCR3P49682 368 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 SULT1E1P49888 294 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 PLTPP55058 493 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 SLC8A3P57103 927 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 TSPY1Q01534 308 aa6.78□□□□□ -1.32
CAPN3-210ENST00000561817 RNASELQ05823 741 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms