RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 AUHQ13825 339 aaKnown RBP16.85■□□□□ 0.29
COL7A1-210ENST00000487017 POU6F1Q14863 301 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 TAF2Q6P1X5 1199 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 CCDC103Q8IW40 242 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 HOMEZQ8IX15 550 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 LNX1Q8TBB1 728 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-210ENST00000487017 BAP1Q92560 729 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 KCNMB3Q9NPA1 279 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 CYP39A1Q9NYL5 469 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 CROTQ9UKG9 612 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 PCDHB7Q9Y5E2 793 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 SPATA31D1Q6ZQQ2 1576 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 HACD1B0YJ81 288 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 TCF3P15923 654 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 MIPP30301 263 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 CASP5P51878 434 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 KYAT3Q6YP21 454 aaKnown RBP16.85■□□□□ 0.29
COL7A1-210ENST00000487017 POU5F2Q8N7G0 328 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 PRCCQ92733 491 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-210ENST00000487017 CLPBQ9H078 707 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 NRDE2Q9H7Z3 1164 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 ACTL7BQ9Y614 415 aa16.85■□□□□ 0.29
COL7A1-210ENST00000487017 MROH1Q8NDA8 1641 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 TMEM150BA6NC51 233 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 ASS1P00966 412 aaKnown RBP16.84■□□□□ 0.29
COL7A1-210ENST00000487017 CRABP2P29373 138 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 DDX39BQ13838 428 aaKnown RBP16.84■□□□□ 0.29
COL7A1-210ENST00000487017 SLC45A4Q5BKX6 768 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 NAIF1Q69YI7 327 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-210ENST00000487017 ZFP1Q6P2D0 407 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 GJB6O95452 261 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 PPP3CAQ08209 521 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 POLD3Q15054 466 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-210ENST00000487017 VPS33AQ96AX1 596 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 PRDM4Q9UKN5 801 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 AMPD1P23109 780 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 DLG4P78352 724 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 LPCAT2Q7L5N7 544 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 COLEC11Q9BWP8 271 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 UNKQ9C0B0 810 aaKnown RBP16.84■□□□□ 0.29
COL7A1-210ENST00000487017 EPS8L2Q9H6S3 715 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 RBM22Q9NW64 420 aaKnown RBP eCLIP16.84■□□□□ 0.29
COL7A1-210ENST00000487017 THP07101 528 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 TPH1P17752 444 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 SOX6P35712 828 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 MLH1P40692 756 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 IL17AQ16552 155 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 RIPOR1Q6ZS17 1223 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 DHFR2Q86XF0 187 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 OR6Y1Q8NGX8 325 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 ASB7Q9H672 318 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 DDX4Q9NQI0 724 aaKnown RBP16.84■□□□□ 0.29
COL7A1-210ENST00000487017 TRHDEQ9UKU6 1024 aa16.84■□□□□ 0.29
COL7A1-210ENST00000487017 TNFAIP8O95379 198 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 TGFB3P10600 412 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 THPOP40225 353 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 ZFRQ96KR1 1074 aaKnown RBP16.83■□□□□ 0.29
COL7A1-210ENST00000487017 KIAA1683Q9H0B3 1180 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 ASTN1O14525 1302 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 CASZ1Q86V15 1759 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 PSMG1O95456 288 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 PGS1Q32NB8 556 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 ZCCHC23Q6ZST2 131 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 LRRC39Q96DD0 335 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 COMMD8Q9NX08 183 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 POLG2Q9UHN1 485 aa16.83■□□□□ 0.29
COL7A1-210ENST00000487017 F8VP50 259 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 MLNP12872 115 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 KRR1Q13601 381 aaKnown RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 FASTKQ14296 549 aaKnown RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 RNF43Q68DV7 783 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 BHMTQ93088 406 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 PHF21BQ96EK2 531 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 SNTG2Q9NY99 539 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 RRN3Q9NYV6 651 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 MROH7Q68CQ1 1323 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 ZSCAN5DPP0CG00 497 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 ITGALP20701 1170 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 KDELR1P24390 212 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 DSG3P32926 999 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 SLC16A1P53985 500 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 EFEMP1Q12805 493 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 CHMP1BQ7LBR1 199 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 MIER2Q8N344 545 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 DNAJC19Q96DA6 116 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 RMND5BQ96G75 393 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 CELF6Q96J87 481 aaKnown RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 PRKD2Q9BZL6 878 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 H7C4K7 107 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 LZTS3O60299 673 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 ZNF157P51786 506 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 RAD23AP54725 363 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 SLC6A3Q01959 620 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 ADIGQ0VDE8 80 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 TRAF2Q12933 501 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 PLEKHA7Q6IQ23 1121 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 ERO1BQ86YB8 467 aa16.83■□□□□ 0.28
COL7A1-210ENST00000487017 FAM163AQ96GL9 167 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 ZNF184Q99676 751 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 OSBPL10Q9BXB5 764 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms