RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 SPATA31A3Q5VYP0 1347 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 LOC100506127A0A0U1RQW1 187 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 KPNA7A9QM74 516 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 FBP2O00757 339 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ADAM23O75077 832 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 OPN1LWP04000 364 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 HMGCRP04035 888 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 HRGP04196 525 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 CLUP10909 449 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 MYL6BP14649 208 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TNFSF4P23510 183 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 RYKP34925 604 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TIE1P35590 1138 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 HARS2P49590 506 aaKnown RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 SCAND1P57086 179 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 DNM1Q05193 864 aaKnown RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 DNAJC3Q13217 504 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ADAM9Q13443 819 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 KCNAB1Q14722 419 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 NPTX1Q15818 432 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 CCDC142Q17RM4 750 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 PLA1AQ53H76 456 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TMEM31Q5JXX7 168 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 C10orf120Q5SQS8 335 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 SULT6B1Q6IMI4 303 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 IDO2Q6ZQW0 420 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 LDHDQ86WU2 507 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 FIBCD1Q8N539 461 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 OXR1Q8N573 874 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ZBTB34Q8NCN2 500 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TRPV3Q8NET8 790 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.6□□□□□ -1.832e-7■■■■□ 19.9
UBR3-208ENST00000474426 UBLCP1Q8WVY7 318 aaPredicted RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 NSUN4Q96CB9 384 aaKnown RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 TRAPPC9Q96Q05 1148 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ZKSCAN3Q9BRR0 538 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 FUT8Q9BYC5 575 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 RUBCNLQ9H714 662 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 FAM114A2Q9NRY5 505 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 FAIMQ9NVQ4 179 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 CFAP97Q9P2B7 532 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 RCOR3Q9P2K3 495 aaPredicted RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 CACNG4Q9UBN1 327 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 DBF4Q9UBU7 674 aaPredicted RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 ZNF215Q9UL58 517 aaPredicted RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 GINS2Q9Y248 185 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ATP23Q9Y6H3 246 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 WDR7Q9Y4E6 1490 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 hCG_1809904A0A1W2PP81 198 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 A0A1W2PPE2 198 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 A0A1W2PR64 198 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 MFSD2BA6NFX1 497 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ARGFXA6NJG6 315 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 NT5C1B-RDH14C9J2C7 533 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 E9PBE3 544 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 H0Y858 1186 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ZNF197O14709 1029 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 VEGFDO43915 354 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 PHF2O75151 1096 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 PGLSO95336 258 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 PLEKHA8P1O95397 391 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 OTCP00480 354 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TUBB4AP04350 444 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ERVK-10P10266 1014 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 GHRP10912 638 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 BMP2P12643 396 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ADSSP30520 456 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 GRK3P35626 688 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 PRCPP42785 496 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 RECQLP46063 649 aaPredicted RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 CASP4P49662 377 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TAS2R40P59535 323 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ERVK-21P61565 698 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 HNRNPKP61978 463 aaKnown RBP eCLIP3.6□□□□□ -1.83
UBR3-208ENST00000474426 PMS2P3Q13401 168 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 SNTA1Q13424 505 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 SEMA5AQ13591 1074 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 SGO2Q562F6 1265 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TDRD12Q587J7 1177 aaKnown RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 ANKRD20A1Q5TYW2 823 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 LCN1P1Q5VSP4 162 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 DENND2CQ68D51 928 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 GPR153Q6NV75 609 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 KRT25Q7Z3Z0 450 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ITIH5Q86UX2 942 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 MICU3Q86XE3 530 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TREML1Q86YW5 311 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 SCUBE3Q8IX30 993 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 CMTR2Q8IYT2 770 aaKnown RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 BBS5Q8N3I7 341 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ZNF366Q8N895 744 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 RNF169Q8NCN4 708 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 FAM13CQ8NE31 585 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 MCPH1Q8NEM0 835 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 ATP8B4Q8TF62 1192 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 SEC14L1Q92503 715 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 FAM122AQ96E09 287 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 MED15Q96RN5 788 aa3.6□□□□□ -1.83
UBR3-208ENST00000474426 TRIM56Q9BRZ2 755 aaKnown RBP3.6□□□□□ -1.83
UBR3-208ENST00000474426 TRIM15Q9C019 465 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms