RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CHORDC1Q9UHD1 332 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 SIX4Q9UIU6 781 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 DSEQ9UL01 958 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 AGAP1Q9UPQ3 857 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 DNM3Q9UQ16 869 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 STARD13Q9Y3M8 1113 aa5.62□□□□□ -1.51
PTPN4-209ENST00000469511 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 COL27A1Q8IZC6 1860 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-209ENST00000469511 FLNCQ14315 2725 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 CDC14CA4D256 554 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 F8VP50 259 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 H3BM21 787 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 CLDN5O00501 218 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 GABRDO14764 452 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 CAPN9O14815 690 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 WNT9AO14904 365 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 COCHO43405 550 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SLC28A2O43868 658 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 BRINP1O60477 761 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 GREM1O60565 184 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ZNF217O75362 1048 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 CDKL5O76039 1030 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 CER1O95813 267 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 PIGRP01833 764 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ITGB3P05106 788 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 PDGFRBP09619 1106 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 RARAP10276 462 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 MUTP22033 750 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 GUCY2CP25092 1073 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ADSSP30520 456 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ACSL1P33121 698 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SOX18P35713 384 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 IL12RB1P42701 662 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 TPMTP51580 245 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SLC12A3P55017 1021 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 DAB2P98082 770 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SMARCB1Q12824 385 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 RTP5Q14D33 572 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SF3A1Q15459 793 aaKnown RBP5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SHBQ15464 509 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 CFAP221Q4G0U5 840 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 TTC38Q5R3I4 469 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SYCP2LQ5T4T6 812 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 KIAA1614Q5VZ46 1190 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 TPGS1Q6ZTW0 290 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 DENND5BQ6ZUT9 1274 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ERICH1Q86X53 443 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ADGRF2Q8IZF7 708 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 C1orf127Q8N9H9 656 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SYT2Q8N9I0 419 aaPredicted RBP5.61□□□□□ -1.51
PTPN4-209ENST00000469511 KBTBD7Q8WVZ9 684 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 TTC9Q92623 222 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 BHMTQ93088 406 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 DUSP9Q99956 384 aaKnown RBP5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ORAI3Q9BRQ5 295 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 TTLL2Q9BWV7 592 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ZDHHC5Q9C0B5 715 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 BRMS1Q9HCU9 246 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ABCB6Q9NP58 842 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SPHK2Q9NRA0 654 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 DNAJC17Q9NVM6 304 aaKnown RBP5.61□□□□□ -1.51
PTPN4-209ENST00000469511 CLEC4EQ9ULY5 219 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 ANKRD6Q9Y2G4 727 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 PCDHB6Q9Y5E3 794 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 SNX9Q9Y5X1 595 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 STON1Q9Y6Q2 735 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 COL12A1Q99715 3063 aa5.61□□□□□ -1.51
PTPN4-209ENST00000469511 RP1P56715 2156 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 PTPRJQ12913 1337 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 GOLGA8IPA6NC78 632 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 GOLGA8JA6NMD2 632 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 NEDD8-MDP1E9PL57 170 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 SLC9A3R1O14745 358 aaPredicted RBP5.6□□□□□ -1.51
PTPN4-209ENST00000469511 HNRNPDLO14979 420 aaKnown RBP5.6□□□□□ -1.51
PTPN4-209ENST00000469511 HOXC11O43248 304 aaPredicted RBP5.6□□□□□ -1.51
PTPN4-209ENST00000469511 MMP20O60882 483 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TBX18O95935 607 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 WNT1P04628 370 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 VSIG8P0DPA2 414 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 NFKB1P19838 968 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 MAGEA11P43364 429 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 ACADVLP49748 655 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 COPAP53621 1224 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TFAMQ00059 246 aaKnown RBP5.6□□□□□ -1.51
PTPN4-209ENST00000469511 CTBSQ01459 385 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 CYP27A1Q02318 531 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 DHX8Q14562 1220 aaKnown RBP5.6□□□□□ -1.51
PTPN4-209ENST00000469511 SV2CQ496J9 727 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 HES3Q5TGS1 186 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 HAUS3Q68CZ6 603 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 HIST2H2BCQ6DN03 193 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 GRAMD4Q6IC98 578 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 FBXL19Q6PCT2 694 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TMPRSS12Q86WS5 348 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 TMPRSS6Q8IU80 811 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 CD302Q8IX05 232 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 GALNT12Q8IXK2 581 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 FSIP1Q8NA03 581 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 SCAMP5Q8TAC9 235 aa5.6□□□□□ -1.51
PTPN4-209ENST00000469511 SORCS1Q8WY21 1168 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms