RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CCDC157Q569K6 752 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 RAB41Q5JT25 222 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 PRAMEF14Q5SWL7 426 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 SERPINA13PQ6UXR4 307 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 RSRC2Q7L4I2 434 aaKnown RBP8.48□□□□□ -1.05
VIM-202ENST00000421459 ANKS1BQ7Z6G8 1248 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 FMNL3Q8IVF7 1028 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 SMYD4Q8IYR2 804 aaPredicted RBP8.48□□□□□ -1.05
VIM-202ENST00000421459 CADM4Q8NFZ8 388 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 UBA3Q8TBC4 463 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 WFDC5Q8TCV5 224 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 RHBDD1Q8TEB9 315 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 TMEM176AQ96HP8 235 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 NUP58Q9BVL2 599 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 ULBP1Q9BZM6 244 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 CCDC86Q9H6F5 360 aaKnown RBP8.48□□□□□ -1.05
VIM-202ENST00000421459 PNPLA8Q9NP80 782 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 CISHQ9NSE2 258 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 CLIC5Q9NZA1 410 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 TRAF3IP3Q9Y228 551 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 HPSEQ9Y251 543 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 SNX11Q9Y5W9 270 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 PLXND1Q9Y4D7 1925 aa8.48□□□□□ -1.05
VIM-202ENST00000421459 CACNA1EQ15878 2313 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 MSI1O43347 362 aaKnown RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 GABBR2O75899 941 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 ZBED1O96006 694 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 CYBBP04839 570 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 KRT13P13646 458 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 HOXD9P28356 352 aaPredicted RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 OXTRP30559 389 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 NUMBP49757 651 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 PSEN1P49768 467 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 ARID5AQ03989 594 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 PDE4CQ08493 712 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 DPYDQ12882 1025 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 HNRNPDQ14103 355 aaKnown RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 ACAP1Q15027 740 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 PTPRNQ16849 979 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 FNDC3BQ53EP0 1204 aaKnown RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 RFWD3Q6PCD5 774 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 INTS8Q75QN2 995 aaKnown RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 CHST9Q7L1S5 443 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 TADA2BQ86TJ2 420 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 PDZD3Q86UT5 571 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 ZNF276Q8N554 614 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 OR2T3Q8NH03 318 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 BAHD1Q8TBE0 780 aaPredicted RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 UCMAQ8WVF2 138 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 MYEOVQ96EZ4 313 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 LRIG1Q96JA1 1093 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 BBC3Q96PG8 261 aaPredicted RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 IMPG2Q9BZV3 1241 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 DCLK3Q9C098 648 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 ZDHHC5Q9C0B5 715 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 GOLPH3LQ9H4A5 285 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 TMEM8AQ9HCN3 771 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 TM9SF3Q9HD45 589 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 ABCB8Q9NUT2 735 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 APOBEC2Q9Y235 224 aaKnown RBP8.47□□□□□ -1.05
VIM-202ENST00000421459 ANKRD6Q9Y2G4 727 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 ZNF510Q9Y2H8 683 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 PKD1L2Q7Z442 2459 aa8.47□□□□□ -1.05
VIM-202ENST00000421459 GON4LQ3T8J9 2241 aa8.46□□□□□ -1.05
VIM-202ENST00000421459 BAHCC1Q9P281 2608 aa8.46□□□□□ -1.05
VIM-202ENST00000421459 YJEFN3A6XGL0 299 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 E7ENQ6 273 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 H0Y8X5 98 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CBX4O00257 560 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 MAPK13O15264 365 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 RHOBTB3O94955 611 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 FSBPO95073 299 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 ZIC2O95409 532 aaPredicted RBP8.46□□□□□ -1.06
VIM-202ENST00000421459 IGLV3-19P01714 112 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 LCP1P13796 627 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CMA1P23946 247 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CD70P32970 193 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 PSMC2P35998 433 aaKnown RBP8.46□□□□□ -1.06
VIM-202ENST00000421459 RGS7P49802 495 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 RPS14P62263 151 aaKnown RBP8.46□□□□□ -1.06
VIM-202ENST00000421459 CYP4F3Q08477 520 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 LRMPQ12912 555 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CAMK2GQ13555 558 aaPredicted RBP8.46□□□□□ -1.06
VIM-202ENST00000421459 TRIP4Q15650 581 aaPredicted RBP8.46□□□□□ -1.06
VIM-202ENST00000421459 CBWD6Q4V339 395 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 ZCWPW2Q504Y3 356 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CBWD3Q5JTY5 395 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CBWD5Q5RIA9 395 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 BSPRYQ5W0U4 402 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 ARHGAP17Q68EM7 881 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 KRT39Q6A163 491 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 PM20D1Q6GTS8 502 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 DBX2Q6ZNG2 339 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 TMPRSS7Q7RTY8 843 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 GLRX5Q86SX6 157 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 ADIPOR2Q86V24 386 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 FAM217AQ8IXS0 508 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CPXM2Q8N436 756 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 ANKRD52Q8NB46 1076 aa8.46□□□□□ -1.06
VIM-202ENST00000421459 CLEC4CQ8WTT0 213 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms