RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 SAMD4BQ5PRF9 694 aaKnown RBP16.32■□□□□ 0.2
COL17A1-202ENST00000369733 RNF220Q5VTB9 566 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 TMC5Q6UXY8 1006 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.32■□□□□ 0.2
COL17A1-202ENST00000369733 DHRSXQ8N5I4 330 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 FITM2Q8N6M3 262 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 ZFYVE19Q96K21 471 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 NMRAL1Q9HBL8 299 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 RRN3Q9NYV6 651 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 ZBTB24O43167 697 aaPredicted RBP16.32■□□□□ 0.2
COL17A1-202ENST00000369733 PIAS1O75925 651 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 GH1P01241 217 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 ATXN8OSP0DMR3 200 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 COX4I1P13073 169 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 CCDC167Q9P0B6 97 aa16.32■□□□□ 0.2
COL17A1-202ENST00000369733 PCSK1P29120 753 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 RAD23AP54725 363 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 FOLH1Q04609 750 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 CWF19L1Q69YN2 538 aaKnown RBP16.31■□□□□ 0.2
COL17A1-202ENST00000369733 ETNK2Q9NVF9 386 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 COMMD8Q9NX08 183 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 ANKRD6Q9Y2G4 727 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 BLMHQ13867 455 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 MAPK11Q15759 364 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 ATP13A4Q4VNC1 1196 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 TMC7Q7Z402 723 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 MAP4K3Q8IVH8 894 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 FAM136AQ96C01 138 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 NDUFAF1Q9Y375 327 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 DPPA5A6NC42 116 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 DDTLA6NHG4 134 aaPredicted RBP16.31■□□□□ 0.2
COL17A1-202ENST00000369733 SERPINA6P08185 405 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 TPH1P17752 444 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 RPL22P35268 128 aaKnown RBP16.31■□□□□ 0.2
COL17A1-202ENST00000369733 RPL14P50914 215 aaKnown RBP16.31■□□□□ 0.2
COL17A1-202ENST00000369733 MARSP56192 900 aaKnown RBP16.31■□□□□ 0.2
COL17A1-202ENST00000369733 CYP51A1Q16850 503 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 FAM98BQ52LJ0 330 aaKnown RBP16.31■□□□□ 0.2
COL17A1-202ENST00000369733 PXMP2Q9NR77 195 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 RASSF9O75901 435 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 TSHRP16473 764 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 AAGABQ6PD74 315 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 POLNQ7Z5Q5 900 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 SH3KBP1Q96B97 665 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 NSMCE2Q96MF7 247 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 ZDHHC15Q96MV8 337 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 NDNQ99608 321 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 UBQLN1Q9UMX0 589 aaKnown RBP16.31■□□□□ 0.2
COL17A1-202ENST00000369733 VPS9D1Q9Y2B5 631 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 TMX2Q9Y320 296 aa16.31■□□□□ 0.2
COL17A1-202ENST00000369733 GSC2O15499 205 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 ASNA1O43681 348 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 TOMM70O94826 608 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 MICAL2O94851 1124 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 CSPG5O95196 566 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 ITGAVP06756 1048 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 MIER2Q8N344 545 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 PCDH20Q8N6Y1 951 aaKnown RBP16.3■□□□□ 0.2
COL17A1-202ENST00000369733 CHST13Q8NET6 341 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 VPS37AQ8NEZ2 397 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 FAM210AQ96ND0 272 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 ACSS3Q9H6R3 686 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 WWOXQ9NZC7 414 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 PACSIN3Q9UKS6 424 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 CDV3Q9UKY7 258 aaKnown RBP16.3■□□□□ 0.2
COL17A1-202ENST00000369733 POLIQ9UNA4 740 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 IQCA1LA6NCM1 817 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 HMGCRP04035 888 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 GSNP06396 782 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 EIF4BP23588 611 aaKnown RBP16.3■□□□□ 0.2
COL17A1-202ENST00000369733 NR2C2P49116 596 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 ACAP1Q15027 740 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 PKN3Q6P5Z2 889 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 BNIPLQ7Z465 357 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 BBS7Q8IWZ6 715 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 EFCAB3Q8N7B9 438 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 VPS33AQ96AX1 596 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 TMEM245Q9H330 911 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 PRR23D1E9PI22 279 aaPredicted RBP16.3■□□□□ 0.2
COL17A1-202ENST00000369733 PIGNO95427 931 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 PRR23D2P0DMB1 279 aaPredicted RBP16.3■□□□□ 0.2
COL17A1-202ENST00000369733 DDX5P17844 614 aaKnown RBP16.3■□□□□ 0.2
COL17A1-202ENST00000369733 CD151P48509 253 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 SLC5A9Q2M3M2 681 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 CEP78Q5JTW2 689 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 NOTUMQ6P988 496 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 FBXW8Q8N3Y1 598 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 ATXN10Q9UBB4 475 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 FUT2Q10981 343 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 LRRC38Q5VT99 294 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 OR8H2Q8N162 312 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 TLCD1Q96CP7 247 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 SLC25A23Q9BV35 468 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 FHDC1Q9C0D6 1143 aaPredicted RBP16.3■□□□□ 0.2
COL17A1-202ENST00000369733 TTYH3Q9C0H2 523 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 SLC38A7Q9NVC3 462 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 MPP6Q9NZW5 540 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 TSPAN16Q9UKR8 245 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 RIC1Q4ADV7 1423 aa16.3■□□□□ 0.2
COL17A1-202ENST00000369733 GRIN2DO15399 1336 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms