RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 FIG4Q92562 907 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PLA2G12BQ9BX93 195 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 SLC35C2Q9NQQ7 365 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 DSEQ9UL01 958 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 TRIM49D1C9J1S8 452 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PIK3CDO00329 1044 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PQBP1O60828 265 aaKnown RBP10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ATG7O95352 703 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PSMB9P28065 219 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ATP2C1P98194 919 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-202ENST00000358808 TSNQ15631 228 aaKnown RBP10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PPM1LQ5SGD2 360 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 IKBIPQ70UQ0 350 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 FAM220AQ7Z4H9 259 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF34Q8IZ26 560 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 PCSK9Q8NBP7 692 aaKnown RBP10.44□□□□□ -0.74
CLIP1-202ENST00000358808 HPS3Q969F9 1004 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 REPS1Q96D71 796 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 TMEM8AQ9HCN3 771 aa10.44□□□□□ -0.74
CLIP1-202ENST00000358808 XYLBO75191 536 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 GLRA3O75311 464 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 KRT6AP02538 564 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 AMHP03971 560 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 KRT6BP04259 564 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 SUPT20HL2P0C7V6 817 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 IFNGR2P38484 337 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 KRT6CP48668 564 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 TCEA2Q15560 299 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 FAM171BQ6P995 826 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 PLEKHH3Q7Z736 793 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 TLR8Q9NR97 1041 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 LRRC4BQ9NT99 713 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 COMMD8Q9NX08 183 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 LOC102724159A0A0B4J2E5 919 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ERI2A8K979 691 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 PHF20L1A8MW92 1017 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 TMEM114B3SHH9 223 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 MYL12BO14950 172 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 BAIAP3O94812 1187 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 TSPAN19P0C672 248 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 CYP2A6P11509 494 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 MDH1P40925 334 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 PSMD4P55036 377 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 CENPCQ03188 943 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 SRSF11Q05519 484 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 PWP2Q15269 919 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 NR6A1Q15406 480 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 SH2D3CQ8N5H7 860 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 CDK5RAP1Q96SZ6 601 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF185O15231 689 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 SCGNO76038 276 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ALDH2P05091 517 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ITGA3P26006 1051 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ZNHIT3Q15649 155 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 PTAR1Q7Z6K3 402 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 DPF2Q92785 391 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 OMDQ99983 421 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 LRRC1Q9BTT6 524 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 DPY30Q9C005 99 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 COPG2Q9UBF2 871 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 POLR1AO95602 1720 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 IGSF9BQ9UPX0 1349 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 CTCFP49711 727 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ARHGDIBP52566 201 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 DSG1Q02413 1049 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 EPC2Q52LR7 807 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 KIF2BQ8N4N8 673 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ZNF473Q8WTR7 871 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ARHGAP28Q9P2N2 729 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 USP18Q9UMW8 372 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 DRG1Q9Y295 367 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 A0A087WZ62 844 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 KANSL1LA0AUZ9 987 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 BCLAF3A2AJT9 711 aaKnown RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 COMTP21964 271 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 RENBPP51606 427 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 CSHL1Q14406 222 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 C2CD6Q53TS8 623 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 SLFN11Q7Z7L1 901 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ACOT1Q86TX2 421 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 ZKSCAN4Q969J2 545 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-202ENST00000358808 POLR1BQ9H9Y6 1135 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 PCDHB2Q9Y5E7 798 aa10.43□□□□□ -0.74
CLIP1-202ENST00000358808 MYMKA6NI61 221 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 TM9SF1O15321 606 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 GARTP22102 1010 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 PSMD7P51665 324 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 ZC2HC1CQ53FD0 456 aaPredicted RBP10.42□□□□□ -0.74
CLIP1-202ENST00000358808 KIAA1324Q6UXG2 1013 aaKnown RBP10.42□□□□□ -0.74
CLIP1-202ENST00000358808 SPATA4Q8NEY3 305 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 CPB2Q96IY4 423 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 KCNF1Q9H3M0 494 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 RHBDL2Q9NX52 303 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 PCDHB9Q9Y5E1 797 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 ADAMTSL3P82987 1691 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 ADCY6O43306 1168 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 SLC25A12O75746 678 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 THRAP10827 490 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 PEX5P50542 639 aa10.42□□□□□ -0.74
CLIP1-202ENST00000358808 ITPK1Q13572 414 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms