RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CYP39A1Q9NYL5 469 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KIF17Q9P2E2 1029 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CRNNQ9UBG3 495 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PCDHGB3Q9Y5G1 929 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TNS1Q9HBL0 1735 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SNAP23O00161 211 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MPZL2O60487 215 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SNX4O95219 450 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ITGA2P17301 1181 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ATF6P18850 670 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CCNE1P24864 410 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RAD23BP54727 409 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 DR1Q01658 176 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 WDR45BQ5MNZ6 344 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TRIM65Q6PJ69 517 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 FAM47EQ6ZV65 393 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PRPF39Q86UA1 669 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TDHQ8IZJ6 230 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MAGOHBQ96A72 148 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 EAF2Q96CJ1 260 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ZFP42Q96MM3 310 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CAMKK2Q96RR4 588 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CDC6Q99741 560 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 THTPAQ9BU02 230 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MRPL4Q9BYD3 311 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ZFP57Q9NU63 452 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CEP290O15078 2479 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 A0A1W2PQJ5 194 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SLC22A2O15244 555 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 AKAP8O43823 692 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HBP1O60381 514 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RECQL5O94762 991 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RTN3O95197 1032 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ALBP02768 609 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 LAG3P18627 525 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 AP1S1P61966 158 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 GNGT1P63211 74 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TOMM20Q15388 145 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TRIM16LQ309B1 348 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 LHFPL3Q86UP9 236 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 FAM98AQ8NCA5 519 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MAGEC3Q8TD91 643 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 NELFBQ8WX92 580 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HERVK_113Q902F9 699 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ARHGEF26Q96DR7 871 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MCRS1Q96EZ8 462 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SCGB3A2Q96PL1 93 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ZCCHC2Q9C0B9 1178 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CDH19Q9H159 772 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MUC3BQ9H195 1237 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 NLRC4Q9NPP4 1024 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ZSWIM8A7E2V4 1837 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 BCL9LQ86UU0 1499 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KCNJ18B7U540 433 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KLRF2D3W0D1 207 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 AIREO43918 545 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SNX2O60749 519 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 AOC2O75106 756 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TIPRLO75663 272 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 AFPP02771 609 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 APODP05090 189 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PLCG1P19174 1290 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PLTPP55058 493 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PER3P56645 1201 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TFAMQ00059 246 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 KCNJ12Q14500 433 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CCDC153Q494R4 210 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 LRRC24Q50LG9 513 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 C2orf27AQ580R0 203 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 HEATR6Q6AI08 1181 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TYW1BQ6NUM6 668 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 MZT2BQ6NZ67 158 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SYT10Q6XYQ8 523 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RASSF6Q6ZTQ3 369 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 STRADAQ7RTN6 431 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF34Q8IZ26 560 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 NRSN1Q8IZ57 195 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ADAM32Q8TC27 787 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SUSD6Q92537 303 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RAD54LQ92698 747 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 GPRASP2Q96D09 838 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 REPS1Q96D71 796 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 REXO5Q96IC2 774 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SLC39A3Q9BRY0 314 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TRIM51Q9BSJ1 452 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RHOBTB2Q9BYZ6 727 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PUS3Q9BZE2 481 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 JPH1Q9HDC5 661 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SUCOQ9UBS9 1254 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ATG4BQ9Y4P1 393 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PRPSAP2O60256 369 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 TRIM13O60858 407 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 CAMTA2O94983 1202 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SPRP35270 261 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 RPL26P61254 145 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 OTUD4Q01804 1114 aaKnown RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 PLOD1Q02809 727 aaPredicted RBP3.37□□□□□ -1.87
CSMD3-202ENST00000339701 IFT88Q13099 833 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 SCGB2A2Q13296 93 aa3.37□□□□□ -1.87
CSMD3-202ENST00000339701 ITPK1Q13572 414 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms