RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 MYLPFQ96A32 169 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 FAM149B1Q96BN6 582 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 LRRC45Q96CN5 670 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 FAM122AQ96E09 287 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 B3GALT6Q96L58 329 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 CFAP57Q96MR6 1250 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 SMOQ99835 787 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 DCLK3Q9C098 648 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 PLEKHA4Q9H4M7 779 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 PRDM16Q9HAZ2 1276 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 PIDD1Q9HB75 910 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 POPDC2Q9HBU9 364 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 CSNK1G1Q9HCP0 422 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 PNPLA8Q9NP80 782 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 DMAP1Q9NPF5 467 aaPredicted RBP9.3□□□□□ -0.92
VPS39-207ENST00000563692 KRT82Q9NSB4 513 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 FNIP2Q9P278 1114 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 TRIP11Q15643 1979 aa9.3□□□□□ -0.92
VPS39-207ENST00000563692 hCG_1818297A0A087WSY0 165 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CCDC195A0A1B0GUA6 201 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 TMEM221A6NGB7 291 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 OR6C75A6NL08 312 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 C2CD4DB7Z1M9 353 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 BHMG1C9JSJ3 638 aaPredicted RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 M0R296 226 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 MAP2K7O14733 419 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 MDM4O15151 490 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 DAPK3O43293 454 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 DAB1O75553 588 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 GABBR2O75899 941 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 BEST1O76090 585 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ZBED1O96006 694 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 KRT10P13645 584 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 TCF4P15884 667 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ZFXP17010 805 aaPredicted RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 ITIH2P19823 946 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 BDNFP23560 247 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 IL1R2P27930 398 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 RDXP35241 583 aaKnown RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 GRIK1P39086 918 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 AIF1P55008 147 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CDH6P55285 790 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CAV1Q03135 178 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 SIGLEC14Q08ET2 396 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CALCOCO2Q13137 446 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 SNX1Q13596 522 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 MTMR3Q13615 1198 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 BYSLQ13895 437 aaKnown RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 LLGL1Q15334 1064 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 PSMD5Q16401 504 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 TAZQ16635 292 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 C15orf59Q2T9L4 293 aaPredicted RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 HSP90B2PQ58FF3 399 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 RAB41Q5JT25 222 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 KCNT1Q5JUK3 1230 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ALS2CLQ60I27 953 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 DUPD1Q68J44 220 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 TTC27Q6P3X3 843 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 TRIM67Q6ZTA4 783 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 RFX6Q8HWS3 928 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 PSTKQ8IV42 348 aaKnown RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 UBALD2Q8IYN6 164 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ZDHHC14Q8IZN3 488 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 DEFB106AQ8N104 65 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 SCML4Q8N228 414 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CCDC89Q8N998 374 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 PIK3R5Q8WYR1 880 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 SMG7Q92540 1137 aaKnown RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 PBXIP1Q96AQ6 731 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 FUBP3Q96I24 572 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS39-207ENST00000563692 PKNOX2Q96KN3 472 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CCDC114Q96M63 670 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 RTP3Q9BQQ7 232 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CALN1Q9BXU9 219 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ZCWPW1Q9H0M4 648 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 TSPYL1Q9H0U9 437 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 KLHL11Q9NVR0 708 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ZDHHC7Q9NXF8 308 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 MTRF1LQ9UGC7 380 aaKnown RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 RAPGEFL1Q9UHV5 662 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 CDH22Q9UJ99 828 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ZNF148Q9UQR1 794 aa9.29□□□□□ -0.92
VPS39-207ENST00000563692 ARIH1Q9Y4X5 557 aaPredicted RBP9.29□□□□□ -0.92
VPS39-207ENST00000563692 ESYT3A0FGR9 886 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 C3orf70A6NLC5 250 aaPredicted RBP9.28□□□□□ -0.92
VPS39-207ENST00000563692 ZNF487B1APH4 448 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 TGM5O43548 720 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 LIASO43766 372 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 CST8O60676 142 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 ENDOD1O94919 500 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 EFEMP2O95967 443 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 RPL17P18621 184 aaKnown RBP9.28□□□□□ -0.92
VPS39-207ENST00000563692 ADCY8P40145 1251 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 KCNJ1P48048 391 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 SULT1E1P49888 294 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 DAOAP59103 153 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 ADCY1Q08828 1119 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 SMTNL2Q2TAL5 461 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 ARL13BQ3SXY8 428 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms