RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TCF3P15923 654 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 LMO2P25791 158 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 MSNP26038 577 aaKnown RBP12.75□□□□□ -0.37
PTPRF-208ENST00000437607 OPRD1P41143 372 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 IFNAR2P48551 515 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 PSMC1P62191 440 aaKnown RBP12.75□□□□□ -0.37
PTPRF-208ENST00000437607 KRT83P78385 493 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 SHC2P98077 582 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 FMO1Q01740 532 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 TOGARAM2Q6ZUX3 1019 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 KIAA1328Q86T90 577 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 ACOT1Q86TX2 421 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 B3GALNT2Q8NCR0 500 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 ACRBPQ8NEB7 543 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 TTC16Q8NEE8 873 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 SH3RF2Q8TEC5 729 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 ATP2A3Q93084 1043 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 FUBP3Q96I24 572 aaKnown RBP eCLIP12.75□□□□□ -0.37
PTPRF-208ENST00000437607 HEXIM2Q96MH2 286 aaKnown RBP12.75□□□□□ -0.37
PTPRF-208ENST00000437607 EIF3CQ99613 913 aaKnown RBP12.75□□□□□ -0.37
PTPRF-208ENST00000437607 ACP6Q9NPH0 428 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 CRTAC1Q9NQ79 661 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 FAM49BQ9NUQ9 324 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 CDH9Q9ULB4 789 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 NME7Q9Y5B8 376 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 FAM208BQ5VWN6 2430 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 BCLAF3A2AJT9 711 aaKnown RBP12.74□□□□□ -0.37
PTPRF-208ENST00000437607 K7EQS6 105 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 APBB3O95704 486 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 LSM8O95777 96 aaKnown RBP12.74□□□□□ -0.37
PTPRF-208ENST00000437607 CALCAP01258 141 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 PDGFRBP09619 1106 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 CHRM1P11229 460 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-208ENST00000437607 MAGEA11P43364 429 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 USP46P62068 366 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 GFPT1Q06210 699 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-208ENST00000437607 GOLGA7BQ2TAP0 167 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 RNF43Q68DV7 783 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 PPP1R2P3Q6NXS1 205 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 ZSCAN30Q86W11 494 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 SPATA2LQ8IUW3 424 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-208ENST00000437607 PASD1Q8IV76 773 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 SCN4BQ8IWT1 228 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 MSANTD4Q8NCY6 345 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 MYLPFQ96A32 169 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 SYT11Q9BT88 431 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 DPEP3Q9H4B8 488 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 HESX1Q9UBX0 185 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 ADAMTS1Q9UHI8 967 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 KIAA1257Q9ULG3 409 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 ARHGAP26Q9UNA1 814 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.74□□□□□ -0.37
PTPRF-208ENST00000437607 INVSQ9Y283 1065 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 EPN1Q9Y6I3 576 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-208ENST00000437607 PCDH15Q96QU1 1955 aa12.74□□□□□ -0.37
PTPRF-208ENST00000437607 A0A087X0T9 212 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 O00370 1275 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 DDX3XO00571 662 aaKnown RBP eCLIP12.73□□□□□ -0.375e-15■■■□□ 17
PTPRF-208ENST00000437607 GIPC1O14908 333 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 ZSCAN12O43309 604 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 FAM228BP0C875 321 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 HNRNPLP14866 589 aaKnown RBP eCLIP12.73□□□□□ -0.37
PTPRF-208ENST00000437607 HDCP19113 662 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 BCKDHBP21953 392 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 BDNFP23560 247 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 NSFP46459 744 aaKnown RBP12.73□□□□□ -0.37
PTPRF-208ENST00000437607 DGKEP52429 567 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 BCAT1P54687 386 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 CREB5Q02930 508 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 MESP2Q0VG99 397 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 MAPRE1Q15691 268 aaKnown RBP12.73□□□□□ -0.37
PTPRF-208ENST00000437607 ELF2Q15723 593 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 ASTE1Q2TB18 679 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-208ENST00000437607 MDH1BQ5I0G3 518 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 CCDC122Q5T0U0 273 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 PMS2CLQ68D20 193 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 ALKBH5Q6P6C2 394 aaKnown RBP12.73□□□□□ -0.37
PTPRF-208ENST00000437607 RASSF3Q86WH2 238 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 SFTPA1Q8IWL2 248 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 USP33Q8TEY7 942 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 ZNF606Q8WXB4 792 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 ACDQ96AP0 544 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 SPATA17Q96L03 361 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 EDEM2Q9BV94 578 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 TPSD1Q9BZJ3 242 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 RNF38Q9H0F5 515 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 TMEM30AQ9NV96 361 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 TSPAN16Q9UKR8 245 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 PCDHGC3Q9UN70 934 aa12.73□□□□□ -0.37
PTPRF-208ENST00000437607 CACNA1EQ15878 2313 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 LNP1A1A4G5 178 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 C4orf47A7E2U8 309 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 TMCO5BA8MYB1 307 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 LEFTY2O00292 366 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 RHOBTB1O94844 696 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 CCDC130P13994 396 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 CHRNB2P17787 502 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 ADORA2BP29275 332 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 VAV2P52735 878 aa12.72□□□□□ -0.37
PTPRF-208ENST00000437607 CACNA2D1P54289 1103 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms