RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 AGO1Q9UL18 857 aaKnown RBP15.21■□□□□ 0.03
SDC1-204ENST00000429035 USP3Q9Y6I4 520 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 GFRA2O00451 464 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 HYAL3O43820 417 aaPredicted RBP15.2■□□□□ 0.02
SDC1-204ENST00000429035 SYNCRIPO60506 623 aaKnown RBP15.2■□□□□ 0.02
SDC1-204ENST00000429035 SYPP08247 313 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 SERPINF2P08697 491 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 MAOBP27338 520 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 BCAT1P54687 386 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 SIM1P81133 766 aaPredicted RBP15.2■□□□□ 0.02
SDC1-204ENST00000429035 ENPEPQ07075 957 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 ADIGQ0VDE8 80 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 LRMPQ12912 555 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 CBWD6Q4V339 395 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 CBWD3Q5JTY5 395 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 CBWD5Q5RIA9 395 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 SYCP2LQ5T4T6 812 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 ARHGAP17Q68EM7 881 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 IPO9Q96P70 1041 aaKnown RBP15.2■□□□□ 0.02
SDC1-204ENST00000429035 MIR1-1HGQ9H1L0 117 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 PRDM16Q9HAZ2 1276 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 TSPAN16Q9UKR8 245 aa15.2■□□□□ 0.02
SDC1-204ENST00000429035 TULP2O00295 520 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 TSPAN3O60637 253 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 ZBED1O96006 694 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 PENKP01210 267 aaPredicted RBP15.19■□□□□ 0.02
SDC1-204ENST00000429035 GNSP15586 552 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 CD6P30203 668 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 PDE4CQ08493 712 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 SGO2Q562F6 1265 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 FMNL3Q8IVF7 1028 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 SIX6OS1Q8N1H7 587 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 RNF139Q8WU17 664 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 SORCS1Q8WY21 1168 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 EDEM1Q92611 657 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 PLD4Q96BZ4 506 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 CAPN10Q9HC96 672 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 CD248Q9HCU0 757 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 RMND1Q9NWS8 449 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 SUSD2Q9UGT4 822 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 ZMIZ1Q9ULJ6 1067 aa15.19■□□□□ 0.02
SDC1-204ENST00000429035 CEP295Q9C0D2 2601 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 TRIM49BA6NDI0 452 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 GOLGA6L4A6NEF3 574 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 ARHGAP33O14559 1287 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 XPO1O14980 1071 aaKnown RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 EPHX1P07099 455 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 ACADMP11310 421 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 NCAM1P13591 858 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 PRKCHP24723 683 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 PRCPP42785 496 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 YWHAEP62258 255 aaKnown RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 BST2Q10589 180 aaKnown RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 SEMA3BQ13214 749 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 CUL2Q13617 745 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 ZNF234Q14588 700 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 NUMA1Q14980 2115 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 WDR45BQ5MNZ6 344 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 SERPINA13PQ6UXR4 307 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 ZCCHC9Q8N567 271 aaKnown RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 ANKRD52Q8NB46 1076 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 UBA3Q8TBC4 463 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 SNX19Q92543 992 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 PRCCQ92733 491 aaPredicted RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 ERCC4Q92889 916 aaPredicted RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 FOXJ1Q92949 421 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 SIPA1Q96FS4 1042 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 TOE1Q96GM8 510 aaKnown RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 GPR174Q9BXC1 333 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 OLA1Q9NTK5 396 aaKnown RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 THAP10Q9P2Z0 257 aaPredicted RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 SFMBT1Q9UHJ3 866 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 FBXO10Q9UK96 956 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 RALYQ9UKM9 306 aaKnown RBP15.18■□□□□ 0.02
SDC1-204ENST00000429035 CLEC4EQ9ULY5 219 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 SLC27A6Q9Y2P4 619 aa15.18■□□□□ 0.02
SDC1-204ENST00000429035 TP53BP1Q12888 1972 aaPredicted RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 MUC22E2RYF6 1773 aaPredicted RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 PIK3R2O00459 728 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 SLC16A3O15427 465 aaKnown RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 MSI1O43347 362 aaKnown RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 HLA-EP13747 358 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 LCP1P13796 627 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 HARS2P49590 506 aaKnown RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 GRIK2Q13002 908 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 FNDC3BQ53EP0 1204 aaKnown RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 RAB41Q5JT25 222 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 FAM124AQ86V42 546 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 TMPRSS6Q8IU80 811 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 CPXM2Q8N436 756 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 ZNF276Q8N554 614 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 ZCCHC14Q8WYQ9 949 aaKnown RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 FAXDC2Q96IV6 333 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 MKRN2Q9H000 416 aaKnown RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 FAM124BQ9H5Z6 455 aaPredicted RBP15.17■□□□□ 0.02
SDC1-204ENST00000429035 ELOVL2Q9NXB9 296 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 KLK13Q9UKR3 277 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 FRYQ5TBA9 3013 aa15.17■□□□□ 0.02
SDC1-204ENST00000429035 IGF2RP11717 2491 aa15.16■□□□□ 0.02
SDC1-204ENST00000429035 NPC1O15118 1278 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms