RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ZNF333Q96JL9 665 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 ACOX2Q99424 681 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 NMRK2Q9NPI5 230 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 CNGB3Q9NQW8 809 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 RNF112Q9ULX5 631 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 SPATA2Q9UM82 520 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 MROH7Q68CQ1 1323 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 C21orf59P57076 290 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 ALDH6A1Q02252 535 aaKnown RBP8.92□□□□□ -0.98
RTN3-202ENST00000339997 MTFR1Q15390 333 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 IL17AQ16552 155 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 AASDHQ4L235 1098 aaPredicted RBP8.92□□□□□ -0.98
RTN3-202ENST00000339997 MIIPQ5JXC2 388 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 NT5DC1Q5TFE4 455 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 NECAB2Q7Z6G3 386 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 ELOA2Q8IYF1 753 aaPredicted RBP8.92□□□□□ -0.98
RTN3-202ENST00000339997 DDI1Q8WTU0 396 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 DCUN1D1Q96GG9 259 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 ZNF560Q96MR9 790 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 ERVK-5Q9HDB9 667 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 DCDC2Q9UHG0 476 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 SALL4Q9UJQ4 1053 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 CRYL1Q9Y2S2 319 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 ZNF839A8K0R7 811 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 FKBP6O75344 327 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 GALK1P51570 392 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 NCKAP1LP55160 1127 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 BST1Q10588 318 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 PEX6Q13608 980 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 CKAP2Q8WWK9 683 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 RIT2Q99578 217 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 FICDQ9BVA6 458 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 SYTL2Q9HCH5 934 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 STMN3Q9NZ72 180 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 WWOXQ9NZC7 414 aa8.92□□□□□ -0.98
RTN3-202ENST00000339997 ADGRL3Q9HAR2 1447 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 LRRC10BA6NIK2 292 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 TRPC5OSA6NMA1 111 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 RASSF9O75901 435 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 ARIH2O95376 493 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 NR6A1Q15406 480 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 WASHC2DQ5SRD0 308 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 TYW3Q6IPR3 259 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 NANOGNBQ7Z5D8 188 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 ZNF614Q8N883 585 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 ATXN2LQ8WWM7 1075 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 NACC2Q96BF6 587 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 TSPAN17Q96FV3 270 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 ETAA1Q9NY74 926 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.91□□□□□ -0.98
RTN3-202ENST00000339997 NCKIPSDQ9NZQ3 722 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 DSEQ9UL01 958 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 GPR75-ASB3A0A0A6YYF3 556 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 TCRBV7S2A1N4TA0A589 114 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 TAF4O00268 1085 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 STX7O15400 261 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 HS6ST1O60243 411 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 SLITRK3O94933 977 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 PIGNO95427 931 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 EPHA3P29320 983 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 USP4Q13107 963 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 PTPN20Q4JDL3 420 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 DGKKQ5KSL6 1271 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 C10orf120Q5SQS8 335 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 AGAP9Q5VTM2 703 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 RBM44Q6ZP01 1051 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 TRIM69Q86WT6 500 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 STX19Q8N4C7 294 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 LINC00116Q8NCU8 138 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 WDR60Q8WVS4 1066 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 MAGED4Q96JG8 741 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 STK39Q9UEW8 545 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 SATB2Q9UPW6 733 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 CYP2B6P20813 491 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 CYP2F1P24903 491 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 AP3M2P53677 418 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 RPL7AP62424 266 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 CDK16Q00536 496 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 MCL1Q07820 350 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 SCARA3Q6AZY7 606 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 IRGCQ6NXR0 463 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 SETD3Q86TU7 594 aaPredicted RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 PURBQ96QR8 312 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 FGFBP2Q9BYJ0 223 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 GGA3Q9NZ52 723 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 SLC24A2Q9UI40 661 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 CNOT7Q9UIV1 285 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 ABT1Q9ULW3 272 aaKnown RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 PEAK1Q9H792 1746 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 RP1L1Q8IWN7 2480 aaPredicted RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 MOXD2PA6NHM9 499 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 F8W810 466 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 MT-ND1P03886 318 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 HMGCRP04035 888 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 GRIA3P42263 894 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 NCALDP61601 193 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 AMPD2Q01433 879 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 LDLRAP1Q5SW96 308 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 FAM180AQ6UWF9 173 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 MICALL2Q8IY33 904 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms