RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 RILPQ96NA2 401 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 CEP350Q5VT06 3117 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 HMX2A2RU54 273 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 DPYSL4O14531 572 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 CREB3O43889 395 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 UPP2O95045 317 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 F7P08709 466 aaPredicted RBP18■□□□□ 0.47
COL9A1-201ENST00000320755 PRKCHP24723 683 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 GMPRP36959 345 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 KDSRQ06136 332 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 NME8Q8N427 588 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 TTC39CQ8N584 583 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 SKA1Q96BD8 255 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 RTP4Q96DX8 246 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 C20orf27Q9GZN8 174 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 PNPLA8Q9NP80 782 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 MTMR10Q9NXD2 777 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 TAS2R1Q9NYW7 299 aa18■□□□□ 0.47
COL9A1-201ENST00000320755 TRDMT1O14717 391 aaKnown RBP17.99■□□□□ 0.47
COL9A1-201ENST00000320755 YY1P25490 414 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 AQP5P55064 265 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 KPNB1Q14974 876 aaKnown RBP17.99■□□□□ 0.47
COL9A1-201ENST00000320755 DCAF6Q58WW2 860 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 C4orf50Q6ZRC1 276 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 PTCD3Q96EY7 689 aaKnown RBP17.99■□□□□ 0.47
COL9A1-201ENST00000320755 SPTLC1O15269 473 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 WFS1O76024 890 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 PTDSS1P48651 473 aaKnown RBP17.99■□□□□ 0.47
COL9A1-201ENST00000320755 ALDH18A1P54886 795 aaKnown RBP17.99■□□□□ 0.47
COL9A1-201ENST00000320755 OLIG2Q13516 323 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 MICAL1Q8TDZ2 1067 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 RNF39Q9H2S5 420 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 SNX25Q9H3E2 840 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 LNPEPQ9UIQ6 1025 aa17.99■□□□□ 0.47
COL9A1-201ENST00000320755 H3BRJ5 948 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 TRAFD1O14545 582 aaPredicted RBP17.98■□□□□ 0.47
COL9A1-201ENST00000320755 SMPD1P17405 629 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 ACAT1P24752 427 aaKnown RBP17.98■□□□□ 0.47
COL9A1-201ENST00000320755 NME3Q13232 169 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 C9orf57Q5W0N0 161 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 TP53INP2Q8IXH6 220 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 FBXO27Q8NI29 283 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 MIEF2Q96C03 454 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 A0A0G2JMZ2 1700 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 LRRC37A2A6NM11 1700 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 B2RBV5 119 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 CLDN5O00501 218 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 VAV1P15498 845 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 GNAZP19086 355 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 ARL4AP40617 200 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 BST2Q10589 180 aaKnown RBP17.98■□□□□ 0.47
COL9A1-201ENST00000320755 DPYSL2Q16555 572 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 SLC27A1Q6PCB7 646 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 DEFB106AQ8N104 65 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 OR6J1Q8NGC5 347 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 TFB1MQ8WVM0 346 aaKnown RBP17.98■□□□□ 0.47
COL9A1-201ENST00000320755 HTR3CQ8WXA8 447 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 NAF1Q96HR8 494 aaKnown RBP17.98■□□□□ 0.47
COL9A1-201ENST00000320755 SGIP1Q9BQI5 828 aa17.98■□□□□ 0.47
COL9A1-201ENST00000320755 FRMD8Q9BZ67 464 aaPredicted RBP17.98■□□□□ 0.47
COL9A1-201ENST00000320755 GCATO75600 419 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 SNAI1O95863 264 aaPredicted RBP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 SNX16P57768 344 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 NBPF20Q3BBV1 942 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 ZNF792Q3KQV3 632 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 FBXO47Q5MNV8 452 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 NCBP2-AS2Q69YL0 99 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 ANKRD52Q8NB46 1076 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 COLGALT1Q8NBJ5 622 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 WDR60Q8WVS4 1066 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 SLC10A4Q96EP9 437 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 ATXN7L3BQ96GX2 97 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 SNX27Q96L92 541 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 GCOM2Q9BZD3 368 aaPredicted RBP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 PIN4Q9Y237 131 aaKnown RBP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 LYPLA1O75608 230 aaPredicted RBP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 KRT36O76013 467 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 TGDSO95455 350 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 PDHA1P08559 390 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 MGAT1P26572 445 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 SULT1E1P49888 294 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 GTF2A2P52657 109 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 ADIGQ0VDE8 80 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 RCN1Q15293 331 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 HSF5Q4G112 596 aaPredicted RBP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 WASHC2DQ5SRD0 308 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 ATG16L1Q676U5 607 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 TREML1Q86YW5 311 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 STKLD1Q8NE28 680 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 MCUQ8NE86 351 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 AGAP3Q96P47 875 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.97■□□□□ 0.47
COL9A1-201ENST00000320755 CACNG4Q9UBN1 327 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 ZNF180Q9UJW8 692 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 OTOFQ9HC10 1997 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 KPNA7A9QM74 516 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 KCNA4P22459 653 aa17.97■□□□□ 0.47
COL9A1-201ENST00000320755 NDUFV1P49821 464 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms