RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 DGUOKQ16854 277 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PPP1R14AQ96A00 147 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 TMEM120AQ9BXJ8 343 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 OSGEPQ9NPF4 335 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 RAD51BO15315 384 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 GJD4Q96KN9 370 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 ZNF518BQ9C0D4 1074 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 KLHL1Q9NR64 748 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 KANSL1LA0AUZ9 987 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PIK3CDO00329 1044 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 RIPK2O43353 540 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 ITGA1P56199 1179 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 STX12Q86Y82 276 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 SLC25A41Q8N5S1 370 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 MMP19Q99542 508 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PI4K2AQ9BTU6 479 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 POLLQ9UGP5 575 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 VAV3Q9UKW4 847 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CCDC182A6NF36 153 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 KLHL41O60662 606 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 HMGCS2P54868 508 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 ITGB3BPQ13352 177 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 CYP4A22Q5TCH4 519 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PAIP1Q9H074 479 aaKnown RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 PNMA8BQ9ULN7 279 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-201ENST00000295550 MYRFQ9Y2G1 1151 aa10.13□□□□□ -0.79
COL6A3-201ENST00000295550 TNFRSF21O75509 655 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 RAG1P15918 1043 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 IL5RAQ01344 420 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 TCHHL1Q5QJ38 904 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 PMF1Q6P1K2 205 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 TDRD5Q8NAT2 981 aaKnown RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 PDE2AO00408 941 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 VIL1P09327 827 aaKnown RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 ZNF284Q2VY69 593 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 PCNX4Q63HM2 1172 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SLC47A2Q86VL8 602 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 ATG16L2Q8NAA4 619 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 TFB1MQ8WVM0 346 aaKnown RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 MED15Q96RN5 788 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 CBWD1Q9BRT8 395 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SHOC2Q9UQ13 582 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 C19orf81C9J6K1 198 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 H7C0S8 307 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 FYNP06241 537 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 TAF8Q7Z7C8 310 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 FBXO25Q8TCJ0 367 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 COMMD8Q9NX08 183 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 ZSCAN5CA6NGD5 496 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SSNA1O43805 119 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 AQP5P55064 265 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SPP2Q13103 211 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 FOXR1Q6PIV2 292 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 PACS2Q86VP3 889 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 DEFB107AQ8IZN7 70 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 CGRRF1Q99675 332 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 BCL2L14Q9BZR8 327 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 GRIP2Q9C0E4 1043 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 ZNRF3Q9ULT6 936 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 BCL9LQ86UU0 1499 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 A8MXQ7 604 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 TSEN34Q9BSV6 310 aaKnown RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 EHD3Q9NZN3 535 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 LOC100506127A0A0U1RQW1 187 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SOAT2O75908 522 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 UBOX5O94941 541 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 LCA5LO95447 670 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 AKAP5P24588 427 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SHMT1P34896 483 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 NDUFAF6Q330K2 333 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SLC25A24Q6NUK1 477 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 RORBQ92753 470 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SLC5A5Q92911 643 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 PPP1R14BQ96C90 147 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 SLC24A2Q9UI40 661 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 ARID1AO14497 2285 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 ITGA4P13612 1032 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 GPD1P21695 349 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 PRKCIP41743 596 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 MTFR1Q15390 333 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 AGAP9Q5VTM2 703 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 RNASE11Q8TAA1 199 aaKnown RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 UTP15Q8TED0 518 aaKnown RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 BDH2Q9BUT1 245 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 NAV1Q8NEY1 1877 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 AP1G2O75843 785 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 BCAP31P51572 246 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 C1QBPQ07021 282 aaKnown RBP10.12□□□□□ -0.79
COL6A3-201ENST00000295550 DGKDQ16760 1214 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 CAPN10Q9HC96 672 aa10.12□□□□□ -0.79
COL6A3-201ENST00000295550 VAC14Q08AM6 782 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 STX4Q12846 297 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 POLD3Q15054 466 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 OR6Y1Q8NGX8 325 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TNIP3Q96KP6 325 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CNPY3Q9BT09 278 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 MROH7Q68CQ1 1323 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 DISP2A7MBM2 1401 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 PDGFRAP16234 1089 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms