RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NPY2RP49146 381 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 PEX5P50542 639 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 EMC1Q8N766 993 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 SLC35C1Q96A29 364 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 DDX28Q9NUL7 540 aaKnown RBP19.65■□□□□ 0.74
UPF1-201ENST00000262803 ANKRD6Q9Y2G4 727 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 ACOT9Q9Y305 439 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 ZNF711Q9Y462 761 aa19.65■□□□□ 0.74
UPF1-201ENST00000262803 H3BRB1 525 aa19.64■□□□□ 0.74
UPF1-201ENST00000262803 HIRAP54198 1017 aaPredicted RBP19.64■□□□□ 0.74
UPF1-201ENST00000262803 TMEM119Q4V9L6 283 aa19.64■□□□□ 0.74
UPF1-201ENST00000262803 SLC26A11Q86WA9 606 aa19.64■□□□□ 0.74
UPF1-201ENST00000262803 ACTL9Q8TC94 416 aa19.64■□□□□ 0.74
UPF1-201ENST00000262803 ASB2Q96Q27 587 aa19.64■□□□□ 0.74
UPF1-201ENST00000262803 KCTD10Q9H3F6 313 aa19.64■□□□□ 0.74
UPF1-201ENST00000262803 TUT1Q9H6E5 874 aaKnown RBP19.64■□□□□ 0.74
UPF1-201ENST00000262803 HNRNPCP07910 306 aaKnown RBP eCLIP19.64■□□□□ 0.73
UPF1-201ENST00000262803 NUP107P57740 925 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 GRIK4Q16099 956 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 CYP51A1Q16850 503 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 OVOS1Q6IE37 1185 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 C10orf53Q8N6V4 93 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 CYP2W1Q8TAV3 490 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 ADAM30Q9UKF2 790 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 USP18Q9UMW8 372 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 SLC9A3R1O14745 358 aaPredicted RBP19.64■□□□□ 0.73
UPF1-201ENST00000262803 LAMTOR4Q0VGL1 99 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 MIB1Q86YT6 1006 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 FBXO16Q8IX29 292 aaPredicted RBP19.64■□□□□ 0.73
UPF1-201ENST00000262803 CCDC33Q8N5R6 958 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 SYTL5Q8TDW5 730 aaPredicted RBP19.64■□□□□ 0.73
UPF1-201ENST00000262803 RUVBL2Q9Y230 463 aaKnown RBP19.64■□□□□ 0.73
UPF1-201ENST00000262803 MAP2P11137 1827 aaKnown RBP19.64■□□□□ 0.73
UPF1-201ENST00000262803 IGSF6O95976 241 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 GNRH1P01148 92 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 MSH3P20585 1137 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 CENPAP49450 140 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 ERVK-9P63128 1117 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 MGAT5Q09328 741 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 TMC7Q7Z402 723 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 LUZP2Q86TE4 346 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 TATDN2Q93075 761 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 NFKBIZQ9BYH8 718 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 KRT84Q9NSB2 600 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 TRPV2Q9Y5S1 764 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 PXDNQ92626 1479 aa19.64■□□□□ 0.73
UPF1-201ENST00000262803 RBAK-RBAKDNI3L0D1 243 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 UBOX5O94941 541 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 CYP2C18P33260 490 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 SHMT1P34896 483 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 CDC16Q13042 620 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 SLC30A10Q6XR72 485 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 ABRAQ8N0Z2 381 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 SLC5A5Q92911 643 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 C19orf60Q96EN9 201 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 BLOC1S4Q9NUP1 217 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 MRPS15P82914 257 aaKnown RBP19.63■□□□□ 0.73
UPF1-201ENST00000262803 SGCGQ13326 291 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 MFSD4BQ5TF39 518 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 CDK20Q8IZL9 346 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 CCT7Q99832 543 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 PLA2G6O60733 806 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 ZNF7P17097 686 aaPredicted RBP19.63■□□□□ 0.73
UPF1-201ENST00000262803 YY1P25490 414 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 SEL1L3Q68CR1 1132 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 FICDQ9BVA6 458 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 AP4S1Q9Y587 144 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 PPATQ06203 517 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 MEA1Q16626 185 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 IQSEC1Q6DN90 963 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 LRRC8DQ7L1W4 858 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 MCOLN2Q8IZK6 566 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 TMEM237Q96Q45 408 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 TSPAN18Q96SJ8 248 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 EXOSC4Q9NPD3 245 aaKnown RBP19.63■□□□□ 0.73
UPF1-201ENST00000262803 NAALADL1Q9UQQ1 740 aa19.63■□□□□ 0.73
UPF1-201ENST00000262803 SKAP2O75563 359 aaPredicted RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 TKTL1P51854 596 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 POLR2LP62875 67 aaKnown RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 CDH17Q12864 832 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 PABPC1LQ4VXU2 614 aaKnown RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 MARC1Q5VT66 337 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 USP50Q70EL3 339 aaPredicted RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 PANX3Q96QZ0 392 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 ASCC2Q9H1I8 757 aaPredicted RBP19.62■□□□□ 0.73
UPF1-201ENST00000262803 ELOVL6Q9H5J4 265 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 RGS18Q9NS28 235 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 H3BMM5 538 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 FAM153BP0C7A2 387 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 RAP1GAPP47736 663 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 RARRES1P49788 294 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 TBX4P57082 545 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 FAM153CQ494X1 144 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 MAGEC3Q8TD91 643 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 VTI1BQ9UEU0 232 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 FAM153AQ9UHL3 310 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 DDX3XO00571 662 aaKnown RBP eCLIP19.62■□□□□ 0.739e-36■■□□□ 13.8
UPF1-201ENST00000262803 RIPK2O43353 540 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 GUCY1B2O75343 617 aa19.62■□□□□ 0.73
UPF1-201ENST00000262803 SASH3O75995 380 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms