RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 OVOS1Q6IE37 1185 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 LUZP2Q86TE4 346 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 SIKE1Q9BRV8 207 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 CYP39A1Q9NYL5 469 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 STMN3Q9NZ72 180 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 DPP7Q9UHL4 492 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 IQSEC2Q5JU85 1478 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 SAC3D1A6NKF1 404 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 CBX4O00257 560 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 RGS5O15539 181 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 TRIM13O60858 407 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 VIL1P09327 827 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 GHRP10912 638 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 DARSP14868 501 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 DSG3P32926 999 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 ZNF135P52742 658 aaPredicted RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 NDST1P52848 882 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 ALDH6A1Q02252 535 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 TGM3Q08188 693 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 PWP1Q13610 501 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 SLC44A2Q8IWA5 706 aaPredicted RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 ACKR2O00590 384 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 DYRK3O43781 588 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 RAMP2O60895 175 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 ALDH2P05091 517 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 HOXC6P09630 235 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 SKIV2L2P42285 1042 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 SCNN1BP51168 640 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 MAD2L1Q13257 205 aaPredicted RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 NCF4Q15080 339 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 TMEM119Q4V9L6 283 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 ATXN2LQ8WWM7 1075 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 HTR3CQ8WXA8 447 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 PARVBQ9HBI1 364 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 RGS18Q9NS28 235 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 CNOT3O75175 753 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 SLITRK3O94933 977 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 HOXB8P17481 243 aaPredicted RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 ATP6V1B2P21281 511 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 KRT20P35900 424 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 HALP42357 657 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 TBL3Q12788 808 aaKnown RBP13.91□□□□□ -0.18
SF3A1-201ENST00000215793 SLC27A1Q6PCB7 646 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 ANKZF1Q9H8Y5 726 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 CD248Q9HCU0 757 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 RAB21Q9UL25 225 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 IPPQ9Y573 584 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 FRMPD4Q14CM0 1322 aa13.91□□□□□ -0.18
SF3A1-201ENST00000215793 CRABP2P29373 138 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 OTOP1Q7RTM1 612 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 PTAR1Q7Z6K3 402 aaPredicted RBP13.9□□□□□ -0.18
SF3A1-201ENST00000215793 BRSK2Q8IWQ3 736 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 CERKQ8TCT0 537 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 KCNQ5Q9NR82 932 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 THAP1Q9NVV9 213 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 ERI2A8K979 691 aaKnown RBP13.9□□□□□ -0.18
SF3A1-201ENST00000215793 ATP5BP06576 529 aaKnown RBP13.9□□□□□ -0.18
SF3A1-201ENST00000215793 SHMT1P34896 483 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 CENPAP49450 140 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 PRMT9Q6P2P2 845 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 ITIH5Q86UX2 942 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 B3GALNT2Q8NCR0 500 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 PNMA5Q96PV4 448 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 OSBPL10Q9BXB5 764 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 PCDHB5Q9Y5E4 795 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 TCRBV5S4A2TA0A5A2 114 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 PGAM1P18669 254 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 NME5P56597 212 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 N4BP2L1Q5TBK1 243 aaPredicted RBP13.9□□□□□ -0.18
SF3A1-201ENST00000215793 TMC3Q7Z5M5 1100 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 ADGRA1Q86SQ6 560 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 C10orf53Q8N6V4 93 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 MRPL48Q96GC5 212 aaKnown RBP13.9□□□□□ -0.18
SF3A1-201ENST00000215793 VAT1Q99536 393 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 STARD13Q9Y3M8 1113 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 BAIAP3O94812 1187 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 ZNF682O95780 498 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 CLPTM1O96005 669 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 TFRCP02786 760 aaKnown RBP13.9□□□□□ -0.18
SF3A1-201ENST00000215793 EIF4BP23588 611 aaKnown RBP13.9□□□□□ -0.18
SF3A1-201ENST00000215793 AXLP30530 894 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 CCNG1P51959 295 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 POU6F1Q14863 301 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 CRYMQ14894 314 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 PGS1Q32NB8 556 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 FAM136AQ96C01 138 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 SERPINB11Q96P15 392 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 TLR10Q9BXR5 811 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 COMMD8Q9NX08 183 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 AHSPQ9NZD4 102 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 PLA2G4CQ9UP65 541 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 USP32Q8NFA0 1604 aa13.9□□□□□ -0.18
SF3A1-201ENST00000215793 HACD1B0YJ81 288 aa13.89□□□□□ -0.19
SF3A1-201ENST00000215793 ENDOD1O94919 500 aa13.89□□□□□ -0.19
SF3A1-201ENST00000215793 CDK7P50613 346 aa13.89□□□□□ -0.19
SF3A1-201ENST00000215793 SPANXN3Q5MJ09 141 aa13.89□□□□□ -0.19
SF3A1-201ENST00000215793 DEFB107AQ8IZN7 70 aa13.89□□□□□ -0.19
SF3A1-201ENST00000215793 REPS2Q8NFH8 660 aa13.89□□□□□ -0.19
SF3A1-201ENST00000215793 APOPT1Q96IL0 206 aa13.89□□□□□ -0.19
SF3A1-201ENST00000215793 PRDM16Q9HAZ2 1276 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms