RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MYL7Q01449 175 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 CYP27A1Q02318 531 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 TLE1Q04724 770 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 PDIA5Q14554 519 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 STARD3Q14849 445 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 TMEM132DQ14C87 1099 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 ENOX2Q16206 610 aaKnown RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 ECM1Q16610 540 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 FOXR1Q6PIV2 292 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 SLC9A9Q8IVB4 645 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 BBS7Q8IWZ6 715 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 MYRFLQ96LU7 910 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF578Q96N58 590 aaPredicted RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 XPO6Q96QU8 1125 aaKnown RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 BBS2Q9BXC9 721 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 MKRN2Q9H000 416 aaKnown RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 OSBPL2Q9H1P3 480 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 TMEM60Q9H2L4 133 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 SPHK2Q9NRA0 654 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 DDX43Q9NXZ2 648 aaKnown RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 DPP3Q9NY33 737 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 PLK2Q9NYY3 685 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 MAGEC2Q9UBF1 373 aaPredicted RBP5.08□□□□□ -1.6
LIMS1-214ENST00000542845 NFE2L3Q9Y4A8 694 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 MAP4K5Q9Y4K4 846 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 STON1Q9Y6Q2 735 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 COL12A1Q99715 3063 aa5.08□□□□□ -1.6
LIMS1-214ENST00000542845 MGAQ8IWI9 3026 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 PLXNA2O75051 1894 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 KNTC1P50748 2209 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 SUV39H1O43463 412 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ATP2C2O75185 946 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 PDGFRBP09619 1106 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 TYRP14679 529 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 BDNFP23560 247 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 PAX3P23760 479 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 RPA1P27694 616 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ACSL1P33121 698 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 KRT2P35908 639 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 CTSKP43235 329 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 DGKGP49619 791 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ACOT2P49753 483 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 LIG4P49917 911 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 SMTNP53814 917 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 CDH8P55286 799 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 WNT7BP56706 349 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 SLC7A9P82251 487 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 INSM1Q01101 510 aaPredicted RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 MCL1Q07820 350 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 BNIP3Q12983 259 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 TLR1Q15399 786 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ZRSR1Q15695 479 aaKnown RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 IGFBP7Q16270 282 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 SV2CQ496J9 727 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 SGO2Q562F6 1265 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 TDRD10Q5VZ19 366 aaKnown RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ALKBH2Q6NS38 261 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 DENND5BQ6ZUT9 1274 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 DDX42Q86XP3 938 aaKnown RBP eCLIP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 PTRH1Q86Y79 214 aaKnown RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ETFBKMTQ8IXQ9 262 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 DAW1Q8N136 415 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 EXTL1Q92935 676 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 WBP2Q969T9 261 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 BIRC7Q96CA5 298 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 VCPIP1Q96JH7 1222 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 GABRG3Q99928 467 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ACBD6Q9BR61 282 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ACE2Q9BYF1 805 aaPredicted RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 DPH1Q9BZG8 443 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 TRIM9Q9C026 710 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 NACA2Q9H009 215 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ETNK1Q9HBU6 452 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 CD248Q9HCU0 757 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 BRMS1Q9HCU9 246 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 AASDHPPTQ9NRN7 309 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 DDX19AQ9NUU7 478 aaKnown RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 USP36Q9P275 1121 aaKnown RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ARHGAP28Q9P2N2 729 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 CHORDC1Q9UHD1 332 aaPredicted RBP5.07□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF232Q9UNY5 417 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 MAN2B2Q9Y2E5 1009 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 STARD13Q9Y3M8 1113 aa5.07□□□□□ -1.6
LIMS1-214ENST00000542845 PTPRJQ12913 1337 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 TEP1Q99973 2627 aaKnown RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 A0A1B0GTQ1 180 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ZNF840PA6NDX5 716 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 K7ENP7 123 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 GFRA2O00451 464 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 OGTO15294 1046 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 HOXC11O43248 304 aaPredicted RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 DFNA5O60443 496 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 RECKO95980 971 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 EPHX1P07099 455 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 CENPBP07199 599 aaPredicted RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 KRT19P08727 400 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 FAM87AP0C7U9 286 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 CKMT2P17540 419 aa5.06□□□□□ -1.6
LIMS1-214ENST00000542845 ERCC5P28715 1186 aaPredicted RBP5.06□□□□□ -1.6
LIMS1-214ENST00000542845 RBMS1P29558 406 aaKnown RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms