RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 PTGISQ16647 500 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 TRIM71Q2Q1W2 868 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 FBXW10Q5XX13 1052 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 MED8Q96G25 268 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 SERAC1Q96JX3 654 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ATXN3LQ9H3M9 355 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 RGS18Q9NS28 235 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 RNF17Q9BXT8 1623 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 SERPINB1P30740 379 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 PREPLQ4J6C6 727 aaPredicted RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 EDEM1Q92611 657 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 PAFAH2Q99487 392 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 VANGL2Q9ULK5 521 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 BNC2Q6ZN30 1099 aaPredicted RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 SLC22A9Q8IVM8 553 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 KLHL28Q9NXS3 571 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 NCKIPSDQ9NZQ3 722 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 FBXO10Q9UK96 956 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ZW10O43264 779 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 CCNT2O60583 730 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 RAMP2O60895 175 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 VEGFAP15692 232 aaPredicted RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ALDH9A1P49189 494 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 HERVK_113P62684 666 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ERMARDQ5T6L9 678 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 FAM171A1Q5VUB5 890 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ZCCHC8Q6NZY4 707 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 INTS5Q6P9B9 1019 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 TMEM159Q96B96 161 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 DNAJC16Q9Y2G8 782 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 MANSC4A6NHS7 340 aaPredicted RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ERI2A8K979 691 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 RBAK-RBAKDNI3L0D1 243 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 SPTLC1O15269 473 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 CSDE1O75534 798 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 PPP2R1BP30154 601 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 SLC26A11Q86WA9 606 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 LRRC34Q8IZ02 419 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ZCCHC2Q9C0B9 1178 aaKnown RBP18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 ATP13A1Q9HD20 1204 aa18.66■□□□□ 0.58
SFSWAP-203ENST00000535236 RGS5O15539 181 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 VHLP40337 213 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 PEX5P50542 639 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 YWHAZP63104 245 aaKnown RBP18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 PGM5Q15124 567 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 CBWD3Q5JTY5 395 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 CBWD5Q5RIA9 395 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 SLC47A2Q86VL8 602 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 RSPH1Q8WYR4 309 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 MTERF3Q96E29 417 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 MAGEB18Q96M61 343 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 BARX2Q9UMQ3 279 aaPredicted RBP18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 BMP10O95393 424 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 ATP6V1B2P21281 511 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 DSG3P32926 999 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 HIRAP54198 1017 aaPredicted RBP18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 DPP10Q8N608 796 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 CELF6Q96J87 481 aaKnown RBP18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 RTFDC1Q9BY42 306 aaPredicted RBP18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 RRN3Q9NYV6 651 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 VPS51Q9UID3 782 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 TK2O00142 265 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 XYLBO75191 536 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 PRKAA1Q13131 559 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 MFSD10Q14728 455 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 NCF4Q15080 339 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 PTPAQ15257 358 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 DEFB132Q7Z7B7 95 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 CDK20Q8IZL9 346 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 SKA1Q96BD8 255 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 FAM120BQ96EK7 910 aaKnown RBP18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 MRPL9Q9BYD2 267 aaKnown RBP18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 SNX8Q9Y5X2 465 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 SNCAIPQ9Y6H5 919 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 PTPRUQ92729 1446 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 KRT6AP02538 564 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 KRT6BP04259 564 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 TGFB3P10600 412 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 SOX6P35712 828 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 KRT6CP48668 564 aa18.65■□□□□ 0.58
SFSWAP-203ENST00000535236 MAGEB16A2A368 324 aa18.64■□□□□ 0.58
SFSWAP-203ENST00000535236 CPA3P15088 417 aa18.64■□□□□ 0.58
SFSWAP-203ENST00000535236 SRLQ86TD4 932 aa18.64■□□□□ 0.58
SFSWAP-203ENST00000535236 POLG2Q9UHN1 485 aa18.64■□□□□ 0.58
SFSWAP-203ENST00000535236 NCKAP1Q9Y2A7 1128 aa18.64■□□□□ 0.58
SFSWAP-203ENST00000535236 SNX13Q9Y5W8 968 aa18.64■□□□□ 0.58
SFSWAP-203ENST00000535236 DDTLA6NHG4 134 aaPredicted RBP18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 ITGB6P18564 788 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 AKAP5P24588 427 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 OR1E1P30953 314 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 NR6A1Q15406 480 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 TDRD5Q8NAT2 981 aaKnown RBP18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 SMARCD1Q96GM5 515 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 RERGLQ9H628 205 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 TAF6LQ9Y6J9 622 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 TECPR2O15040 1411 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 TMEM114B3SHH9 223 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 AKR1A1P14550 325 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 SLC2A4P14672 509 aa18.64■□□□□ 0.57
SFSWAP-203ENST00000535236 MGAT5Q09328 741 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms