RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TRIM24O15164 1050 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 FBXO21O94952 628 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 EEF1GP26641 437 aaKnown RBP21.86■■□□□ 1.09
VPS28-203ENST00000524521 CNR2P34972 360 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 CHKAP35790 457 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 SIM2Q14190 667 aaPredicted RBP21.86■■□□□ 1.09
VPS28-203ENST00000524521 LPAL2Q16609 132 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 NUDT18Q6ZVK8 323 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 SCUBE3Q8IX30 993 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 GOLGA1Q92805 767 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 PLD4Q96BZ4 506 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 PLK2Q9NYY3 685 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 MARK1Q9P0L2 795 aa21.86■■□□□ 1.09
VPS28-203ENST00000524521 AJAP1Q9UKB5 411 aaPredicted RBP21.86■■□□□ 1.09
VPS28-203ENST00000524521 AGO1Q9UL18 857 aaKnown RBP21.86■■□□□ 1.09
VPS28-203ENST00000524521 LTFP02788 710 aa21.85■■□□□ 1.09
VPS28-203ENST00000524521 ACADSBP45954 432 aa21.85■■□□□ 1.09
VPS28-203ENST00000524521 GRAMD4Q6IC98 578 aa21.85■■□□□ 1.09
VPS28-203ENST00000524521 CEP68Q76N32 757 aa21.85■■□□□ 1.09
VPS28-203ENST00000524521 ALLCQ8N6M5 410 aa21.85■■□□□ 1.09
VPS28-203ENST00000524521 ANO10Q9NW15 660 aa21.85■■□□□ 1.09
VPS28-203ENST00000524521 TAB2Q9NYJ8 693 aa21.85■■□□□ 1.09
VPS28-203ENST00000524521 HBS1LQ9Y450 684 aaKnown RBP21.85■■□□□ 1.09
VPS28-203ENST00000524521 CCDC163A0A0D9SF12 145 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 FOXN3O00409 490 aaPredicted RBP21.84■■□□□ 1.09
VPS28-203ENST00000524521 CACNG3O60359 315 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 KLF8O95600 359 aaPredicted RBP21.84■■□□□ 1.09
VPS28-203ENST00000524521 KIR2DL1P43626 348 aaPredicted RBP21.84■■□□□ 1.09
VPS28-203ENST00000524521 HARS2P49590 506 aaKnown RBP21.84■■□□□ 1.09
VPS28-203ENST00000524521 PTK2Q05397 1052 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 KCNMA1Q12791 1236 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 TRIP4Q15650 581 aaPredicted RBP21.84■■□□□ 1.09
VPS28-203ENST00000524521 MEA1Q16626 185 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 C10orf76Q5T2E6 689 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 CCDC183Q5T5S1 534 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 TERB1Q8NA31 727 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 IL17RCQ8NAC3 791 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 TXNDC5Q8NBS9 432 aaKnown RBP21.84■■□□□ 1.09
VPS28-203ENST00000524521 STK32AQ8WU08 396 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 ZDHHC4Q9NPG8 344 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 CYTH4Q9UIA0 394 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 MMP17Q9ULZ9 603 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 USP34Q70CQ2 3546 aa21.84■■□□□ 1.09
VPS28-203ENST00000524521 EP300Q09472 2414 aaPredicted RBP21.84■■□□□ 1.09
VPS28-203ENST00000524521 AXIN1O15169 862 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 MSI1O43347 362 aaKnown RBP21.83■■□□□ 1.09
VPS28-203ENST00000524521 APBB3O95704 486 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 RPL34P49207 117 aaKnown RBP21.83■■□□□ 1.09
VPS28-203ENST00000524521 C11orf57Q6ZUT1 292 aaPredicted RBP21.83■■□□□ 1.09
VPS28-203ENST00000524521 TSTD1Q8NFU3 115 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 FAM149B1Q96BN6 582 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 SLC4A5Q9BY07 1137 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 VPS16Q9H269 839 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 FANCLQ9NW38 375 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 DMDP11532 3685 aa21.83■■□□□ 1.09
VPS28-203ENST00000524521 KIAA1549LQ6ZVL6 1849 aa21.83■■□□□ 1.08
VPS28-203ENST00000524521 CYBBP04839 570 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 PNMA6AP0CW24 399 aaPredicted RBP21.82■■□□□ 1.08
VPS28-203ENST00000524521 NCAM1P13591 858 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 DGKGP49619 791 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 DGKEP52429 567 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 RAPGEF1Q13905 1077 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 STX1AQ16623 288 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 HSF5Q4G112 596 aaPredicted RBP21.82■■□□□ 1.08
VPS28-203ENST00000524521 KLHDC7AQ5VTJ3 777 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 CDKAL1Q5VV42 579 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 DPY19L2P1Q6NXN4 242 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 MSANTD2Q6P1R3 559 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 TOGARAM2Q6ZUX3 1019 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 KIAA2013Q8IYS2 634 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 LSM14BQ9BX40 385 aaKnown RBP21.82■■□□□ 1.08
VPS28-203ENST00000524521 GMEB2Q9UKD1 530 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 VPS13AQ96RL7 3174 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 GPR179Q6PRD1 2367 aa21.82■■□□□ 1.08
VPS28-203ENST00000524521 E5RJQ4 531 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 SGK1O00141 431 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 SART1O43290 800 aaKnown RBP21.81■■□□□ 1.08
VPS28-203ENST00000524521 RPP40O75818 363 aaKnown RBP21.81■■□□□ 1.08
VPS28-203ENST00000524521 TPM2P07951 284 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 CISD3P0C7P0 127 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 CLCN1P35523 988 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 KRT9P35527 623 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 DRAP1Q14919 205 aaPredicted RBP21.81■■□□□ 1.08
VPS28-203ENST00000524521 CRY1Q16526 586 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 EOGTQ5NDL2 527 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 FYB2Q5VWT5 728 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 SMYD5Q6GMV2 418 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 LAIR1Q6GTX8 287 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 TMEM110Q86TL2 294 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 PASD1Q8IV76 773 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 CPXM2Q8N436 756 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 ZNF513Q8N8E2 541 aaPredicted RBP21.81■■□□□ 1.08
VPS28-203ENST00000524521 GAB3Q8WWW8 586 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 P2RY11Q96G91 374 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 EBF1Q9UH73 591 aa21.81■■□□□ 1.08
VPS28-203ENST00000524521 OTOGLQ3ZCN5 2332 aa21.8■■□□□ 1.08
VPS28-203ENST00000524521 TSPAN3O60637 253 aa21.8■■□□□ 1.08
VPS28-203ENST00000524521 PENKP01210 267 aaPredicted RBP21.8■■□□□ 1.08
VPS28-203ENST00000524521 FYNP06241 537 aa21.8■■□□□ 1.08
VPS28-203ENST00000524521 CHRM1P11229 460 aaPredicted RBP21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms