RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 NECAB3Q96P71 396 aaPredicted RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 LRRC37BQ96QE4 947 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 CYTH2Q99418 400 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 C17orf80Q9BSJ5 609 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 SMARCAD1Q9H4L7 1026 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 CXorf56Q9H5V9 222 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 VPS37BQ9H9H4 285 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 PRMT7Q9NVM4 692 aaPredicted RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 ASNSD1Q9NWL6 643 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 BAIAP2L1Q9UHR4 511 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 REV3LO60673 3130 aa11.21□□□□□ -0.62
RTN3-201ENST00000338850 ZBTB42B2RXF5 422 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 HBP1O60381 514 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 RNF8O76064 485 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 LUC7L3O95232 432 aaKnown RBP11.2□□□□□ -0.62
RTN3-201ENST00000338850 KRT16P08779 473 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 TCF4P15884 667 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 RPL22P35268 128 aaKnown RBP11.2□□□□□ -0.62
RTN3-201ENST00000338850 NEK3P51956 506 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 ZNF143P52747 638 aaPredicted RBP11.2□□□□□ -0.62
RTN3-201ENST00000338850 RAD23BP54727 409 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 KCNJ11Q14654 390 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 ZKSCAN8Q15776 578 aaPredicted RBP11.2□□□□□ -0.62
RTN3-201ENST00000338850 ATF7IP2Q5U623 682 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 CYS1Q717R9 158 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 ARCQ7LC44 396 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 ZNF276Q8N554 614 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 MCUQ8NE86 351 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 FBXO22Q8NEZ5 403 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 CXorf38Q8TB03 319 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 AGAP11Q8TF27 550 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 DCAKDQ8WVC6 231 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 SLC44A1Q8WWI5 657 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 RSAD2Q8WXG1 361 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 HLA-CQ95604 372 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 APOPT1Q96IL0 206 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 PAFAH2Q99487 392 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 CNPY3Q9BT09 278 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 MYLK2Q9H1R3 596 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 MMADHCQ9H3L0 296 aaPredicted RBP11.2□□□□□ -0.62
RTN3-201ENST00000338850 IFT122Q9HBG6 1241 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 DNAJC17Q9NVM6 304 aaKnown RBP11.2□□□□□ -0.62
RTN3-201ENST00000338850 PAK5Q9P286 719 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 TBK1Q9UHD2 729 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.2□□□□□ -0.62
RTN3-201ENST00000338850 CHKBQ9Y259 395 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 BRWD1Q9NSI6 2320 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 COL4A6Q14031 1691 aa11.2□□□□□ -0.62
RTN3-201ENST00000338850 RRN3P2A6NIE6 340 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 PI4K2BG5E9Z4 385 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 TRDMT1O14717 391 aaKnown RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 PPP1R12AO14974 1030 aaPredicted RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 CST8O60676 142 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 UPP2O95045 317 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 TRUB2O95900 331 aaKnown RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 INSRRP14616 1297 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 RFC1P35251 1148 aaPredicted RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 GCKP35557 465 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 GJC1P36383 396 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 CCNFP41002 786 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 TNFSF9P41273 254 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 ETV4P43268 484 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 SNX16P57768 344 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 PSMC1P62191 440 aaKnown RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 LPIN1Q14693 890 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 KRT72Q14CN4 511 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 FASTKD3Q14CZ7 662 aaKnown RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 ATP13A4Q4VNC1 1196 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 C2CD6Q53TS8 623 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 FBXO47Q5MNV8 452 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 DAB2IPQ5VWQ8 1189 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 KAZNQ674X7 775 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 DENND1BQ6P3S1 775 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 SH2D5Q6ZV89 423 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 RSPH3Q86UC2 560 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 CEP57Q86XR8 500 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 ZDHHC17Q8IUH5 632 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 ARFGAP1Q8N6T3 406 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 LINC01465Q8N7H1 131 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 DNAJB3Q8WWF6 145 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 ZNF75CPQ92670 426 aaPredicted RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 FAF2Q96CS3 445 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 ERP27Q96DN0 273 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 ZBTB10Q96DT7 871 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 PWWP2AQ96N64 755 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 SAMD11Q96NU1 681 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 YME1L1Q96TA2 773 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 SIKE1Q9BRV8 207 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 TMEM121Q9BTD3 319 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 CDT1Q9H211 546 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 RPF1Q9H9Y2 349 aaKnown RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 CNTN3Q9P232 1028 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 C2CD2Q9Y426 696 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.19□□□□□ -0.62
RTN3-201ENST00000338850 TEX264Q9Y6I9 313 aa11.19□□□□□ -0.62
RTN3-201ENST00000338850 BCLAF3A2AJT9 711 aaKnown RBP11.18□□□□□ -0.62
RTN3-201ENST00000338850 POC1B-GALNT4F8VUJ3 575 aa11.18□□□□□ -0.62
RTN3-201ENST00000338850 MDM4O15151 490 aa11.18□□□□□ -0.62
RTN3-201ENST00000338850 TMEM63AO94886 807 aa11.18□□□□□ -0.62
RTN3-201ENST00000338850 ZSCAN5DPP0CG00 497 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms