RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DDX43Q9NXZ2 648 aaKnown RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 GOLGA8TH3BQL2 631 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 CRTAMO95727 393 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 MAPK10P53779 464 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 BOLA3Q53S33 107 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 RIPOR1Q6ZS17 1223 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 SETD3Q86TU7 594 aaPredicted RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 UBE2OQ9C0C9 1292 aaKnown RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 ATXN3LQ9H3M9 355 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 DUSP10Q9Y6W6 482 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 MAP3K4Q9Y6R4 1608 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 CEP170Q5SW79 1584 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 CCND1P24385 295 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 GCLCP48506 637 aaPredicted RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 BFSP2Q13515 415 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 EDRF1Q3B7T1 1238 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 SBK1Q52WX2 424 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 AKIRIN2Q53H80 203 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 NOL9Q5SY16 702 aaKnown RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 NEK10Q6ZWH5 1172 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 CCDC80Q76M96 950 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 PACS2Q86VP3 889 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 FAM228AQ86W67 206 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 COLGALT1Q8NBJ5 622 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 ANKS1AQ92625 1134 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 AVENQ9NQS1 362 aaPredicted RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 PCDHB12Q9Y5F1 795 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 CRB1P82279 1406 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 O00370 1275 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 CXCL8P10145 99 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 GARTP22102 1010 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 MRPS35P82673 323 aaKnown RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 Q4G0T1 1027 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 SEL1L3Q68CR1 1132 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 ILDR2Q71H61 639 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 DNAJB3Q8WWF6 145 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 FAM120BQ96EK7 910 aaKnown RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 MTA3Q9BTC8 594 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 ROPN1BQ9BZX4 212 aaPredicted RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 KLHL25Q9H0H3 589 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 ROPN1Q9HAT0 212 aaPredicted RBP12.96□□□□□ -0.33
SDC3-201ENST00000336798 RGS18Q9NS28 235 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 ANKEF1Q9NU02 776 aa12.96□□□□□ -0.33
SDC3-201ENST00000336798 CAMTA2O94983 1202 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 ITGAXP20702 1163 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 ANTXR2P58335 489 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 MYL6P60660 151 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 ISLR2Q6UXK2 745 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 ZSWIM1Q9BR11 485 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 WDR41Q9HAD4 459 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 CTNNAL1Q9UBT7 734 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 FAM20BO75063 409 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 EIF2S1P05198 315 aaKnown RBP12.96□□□□□ -0.34
SDC3-201ENST00000336798 AGKQ53H12 422 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 TFDP3Q5H9I0 405 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 PDPK2PQ6A1A2 396 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 DNAJC14Q6Y2X3 702 aaPredicted RBP12.96□□□□□ -0.34
SDC3-201ENST00000336798 RNF44Q7L0R7 432 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.96□□□□□ -0.34
SDC3-201ENST00000336798 RNFT2Q96EX2 444 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 ADGRE3Q9BY15 652 aa12.96□□□□□ -0.34
SDC3-201ENST00000336798 OGTO15294 1046 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 ICAM1P05362 532 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 GJA8P48165 433 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 FNDC3BQ53EP0 1204 aaKnown RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 HLA-DQA1Q5Y7H0 255 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 SNTNA6NMZ2 147 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 ALDH2P05091 517 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 VDRP11473 427 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 GRK4P32298 578 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 GRIK3Q13003 919 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 C9orf131Q5VYM1 1079 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 BNC2Q6ZN30 1099 aaPredicted RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 REXO1L1PQ8IX06 675 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 C19orf18Q8NEA5 215 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 GTF3C2Q8WUA4 911 aaPredicted RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 CPSF1Q10570 1443 aaKnown RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 PSMB9P28065 219 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 PSMC6P62333 389 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 TPGS1Q6ZTW0 290 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 DET1Q7L5Y6 550 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 TMC2Q8TDI7 906 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 PPP1R14BQ96C90 147 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 PRMT6Q96LA8 375 aaPredicted RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 ADI1Q9BV57 179 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 TMEM120AQ9BXJ8 343 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 PRKAG3Q9UGI9 489 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 NUDT5Q9UKK9 219 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 PSTPIP1O43586 416 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 PSMC3P17980 439 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 VHLP40337 213 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 NPTX2P47972 431 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 FGD3Q5JSP0 725 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 FOXR1Q6PIV2 292 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 TMC5Q6UXY8 1006 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 SUGP1Q8IWZ8 645 aaKnown RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 SLC20A1Q8WUM9 679 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 IPCEF1Q8WWN9 437 aaPredicted RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 HIC2Q96JB3 615 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 SERHL2Q9H4I8 314 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms