RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FAM35AQ86V20 835 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 ZC3H3Q8IXZ2 948 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 MYLPFQ96A32 169 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 SDCCAG3Q96C92 435 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 LRGUKQ96M69 825 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 FBXL18Q96ME1 805 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 HNRNPABQ99729 332 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 TTC7AQ9ULT0 858 aaPredicted RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 ZNF839A8K0R7 811 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 STX7O15400 261 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 GLUD1P00367 558 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 LMNAP02545 664 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 CAVIN3Q969G5 261 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 MAGEB10Q96LZ2 347 aaPredicted RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 GPR63Q9BZJ6 419 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 GRID1Q9ULK0 1009 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 APRTP07741 180 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 MATKP42679 507 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 AARSP49588 968 aaKnown RBP eCLIP14.1□□□□□ -0.15
LDLR-201ENST00000252444 MRPS5P82675 430 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 WSCD1Q658N2 575 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 MYCBPAPQ8TBZ2 947 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 ARHGEF2Q92974 986 aaKnown RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 ULK4Q96C45 1275 aa14.1□□□□□ -0.15
LDLR-201ENST00000252444 C11orf84Q9BUA3 381 aaPredicted RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 C2orf49Q9BVC5 232 aaPredicted RBP14.1□□□□□ -0.15
LDLR-201ENST00000252444 SERPINF2P08697 491 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 SERPINB4P48594 390 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 PURAQ00577 322 aaKnown RBP14.09□□□□□ -0.15
LDLR-201ENST00000252444 CDH17Q12864 832 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 SETD3Q86TU7 594 aaPredicted RBP14.09□□□□□ -0.15
LDLR-201ENST00000252444 PBXIP1Q96AQ6 731 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 SMYD3Q9H7B4 428 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 SYTL2Q9HCH5 934 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 SMYD2Q9NRG4 433 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 NMRK1Q9NWW6 199 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 ANKRD6Q9Y2G4 727 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 SERPINB8P50452 374 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 TMPRSS15P98073 1019 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 MARC1Q5VT66 337 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 STK40Q8N2I9 435 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 TAB3Q8N5C8 712 aaPredicted RBP14.09□□□□□ -0.15
LDLR-201ENST00000252444 PLD4Q96BZ4 506 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 MCCC1Q96RQ3 725 aaPredicted RBP14.09□□□□□ -0.15
LDLR-201ENST00000252444 DCDC2Q9UHG0 476 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 GOLGA8TH3BQL2 631 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 RHOAP61586 193 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 ARMC3Q5W041 872 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 DEFB106AQ8N104 65 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 MICALL1Q8N3F8 863 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 E2F7Q96AV8 911 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 SLC9A7Q96T83 725 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 LRRC1Q9BTT6 524 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 RBM12Q9NTZ6 932 aaKnown RBP14.09□□□□□ -0.15
LDLR-201ENST00000252444 MARCH2Q9P0N8 246 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 TRDMT1O14717 391 aaKnown RBP14.09□□□□□ -0.15
LDLR-201ENST00000252444 HMBSP08397 361 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 IFNA8P32881 189 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 PTPN9P43378 593 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 MAPK9P45984 424 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 ITGA8P53708 1063 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 FPGSQ05932 587 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 ZNF284Q2VY69 593 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 NT5DC3Q86UY8 548 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 HEXDCQ8WVB3 486 aa14.09□□□□□ -0.15
LDLR-201ENST00000252444 PACSIN2Q9UNF0 486 aaPredicted RBP14.09□□□□□ -0.15
LDLR-201ENST00000252444 RAD51CO43502 376 aa14.08□□□□□ -0.15
LDLR-201ENST00000252444 DNAJC3Q13217 504 aa14.08□□□□□ -0.15
LDLR-201ENST00000252444 MORN1Q5T089 497 aa14.08□□□□□ -0.15
LDLR-201ENST00000252444 ADAM28Q9UKQ2 775 aa14.08□□□□□ -0.15
LDLR-201ENST00000252444 PLA2G4CQ9UP65 541 aa14.08□□□□□ -0.15
LDLR-201ENST00000252444 HEATR9A2RTY3 570 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 CHADO15335 359 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 TLL1O43897 1013 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 MYL4P12829 197 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 CCR3P51677 355 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 OTUD4Q01804 1114 aaKnown RBP14.08□□□□□ -0.16
LDLR-201ENST00000252444 EEF1DP3Q658K8 133 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 FBXO38Q6PIJ6 1188 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 C17orf99Q6UX52 265 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 ZSWIM2Q8NEG5 633 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 WWP1Q9H0M0 922 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 RASSF4Q9H2L5 321 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 XPNPEP1Q9NQW7 623 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 TMEM150BA6NC51 233 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 ZBTB39O15060 712 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 TREHO43280 583 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 GLRA3O75311 464 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 ELNP15502 786 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 FGFR4P22455 802 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 KCNMA1Q12791 1236 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 MAMLD1Q13495 774 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 PARP6Q2NL67 630 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 DDI1Q8WTU0 396 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 OVCA2Q8WZ82 227 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 ULBP1Q9BZM6 244 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 VPS28Q9UK41 221 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 ADGRA2Q96PE1 1338 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 TTLL13PA6NNM8 815 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 SOCS7O14512 581 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms