RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 PREPLQ4J6C6 727 aaPredicted RBP16.44■□□□□ 0.22
LINC00339-207ENST00000634712 CDKAL1Q5VV42 579 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 NAIF1Q69YI7 327 aaPredicted RBP16.44■□□□□ 0.22
LINC00339-207ENST00000634712 IRGQQ8WZA9 623 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 NKD2Q969F2 451 aaPredicted RBP16.44■□□□□ 0.22
LINC00339-207ENST00000634712 WBP2Q969T9 261 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 PNKPQ96T60 521 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 LSM14BQ9BX40 385 aaKnown RBP16.44■□□□□ 0.22
LINC00339-207ENST00000634712 FAM126AQ9BYI3 521 aaPredicted RBP16.44■□□□□ 0.22
LINC00339-207ENST00000634712 MIS12Q9H081 205 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 SEMA4AQ9H3S1 761 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 SIX2Q9NPC8 291 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 ZSCAN32Q9NX65 697 aa16.44■□□□□ 0.22
LINC00339-207ENST00000634712 YJEFN3A6XGL0 299 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 BECN2A8MW95 431 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.43■□□□□ 0.22
LINC00339-207ENST00000634712 E7ENQ6 273 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 PROB1E7EW31 1015 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 RNF40O75150 1001 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 STC2O76061 302 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 APODP05090 189 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 KRT9P35527 623 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 OPRD1P41143 372 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 GPD2P43304 727 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 BPIFB4P59827 614 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 KCNMA1Q12791 1236 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 KRT31Q15323 416 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 MEA1Q16626 185 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 KLHDC7AQ5VTJ3 777 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 DENND1BQ6P3S1 775 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 NUDT18Q6ZVK8 323 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 EDEM1Q92611 657 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 ACP6Q9NPH0 428 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 WDR35Q9P2L0 1181 aa16.43■□□□□ 0.22
LINC00339-207ENST00000634712 FOXN3O00409 490 aaPredicted RBP16.42■□□□□ 0.22
LINC00339-207ENST00000634712 SART1O43290 800 aaKnown RBP16.42■□□□□ 0.22
LINC00339-207ENST00000634712 HOXD11P31277 338 aaPredicted RBP16.42■□□□□ 0.22
LINC00339-207ENST00000634712 EIF2DP41214 584 aaKnown RBP16.42■□□□□ 0.22
LINC00339-207ENST00000634712 SLC6A11P48066 632 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 TPGS1Q6ZTW0 290 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 BHLHA9Q7RTU4 235 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 TMEM25Q86YD3 366 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 FMNL3Q8IVF7 1028 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 SCUBE3Q8IX30 993 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 NAT16Q8N8M0 369 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 STK32AQ8WU08 396 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 XPO6Q96QU8 1125 aaKnown RBP16.42■□□□□ 0.22
LINC00339-207ENST00000634712 PDCL3Q9H2J4 239 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 ARHGEF4Q9NR80 690 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 SLC8A2Q9UPR5 921 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 PCDHGA2Q9Y5H1 932 aa16.42■□□□□ 0.22
LINC00339-207ENST00000634712 HOXC11O43248 304 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-207ENST00000634712 GREM1O60565 184 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 GFRA3O60609 400 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 LTFP02788 710 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 PTMSP20962 102 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 CORO1AP31146 461 aaKnown RBP16.41■□□□□ 0.22
LINC00339-207ENST00000634712 CHKAP35790 457 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 HARS2P49590 506 aaKnown RBP16.41■□□□□ 0.22
LINC00339-207ENST00000634712 SEC13P55735 322 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 DRAP1Q14919 205 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-207ENST00000634712 GAB4Q2WGN9 574 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 RPLP0P6Q8NHW5 317 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 FAM149B1Q96BN6 582 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 PLD4Q96BZ4 506 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 PCMTD1Q96MG8 357 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-207ENST00000634712 NOX5Q96PH1 765 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 BBS2Q9BXC9 721 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 DEC1Q9P2X7 70 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 SFMBT1Q9UHJ3 866 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 AJAP1Q9UKB5 411 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-207ENST00000634712 HBS1LQ9Y450 684 aaKnown RBP16.41■□□□□ 0.22
LINC00339-207ENST00000634712 CEP83Q9Y592 693 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 FHOD1Q9Y613 1164 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 ATG2BQ96BY7 2078 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 MYOFQ9NZM1 2061 aa16.41■□□□□ 0.22
LINC00339-207ENST00000634712 TBC1D3BA6NDS4 549 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 CHURC1-FNTBB4DL54 471 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 NEDD8-MDP1E9PL57 170 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 GABBR2O75899 941 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 KAT7O95251 611 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 UCHL3P15374 230 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 CLCN1P35523 988 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 GRIA2P42262 883 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 COPB1P53618 953 aaKnown RBP16.4■□□□□ 0.22
LINC00339-207ENST00000634712 SNX16P57768 344 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 KDSRQ06136 332 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 ANO6Q4KMQ2 910 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 Q6ZNB5 142 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 DENND1CQ8IV53 801 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 AOPEPQ8N6M6 819 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 CLEC4CQ8WTT0 213 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 ACDQ96AP0 544 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 TRIM62Q9BVG3 475 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 SLC4A5Q9BY07 1137 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 PCDHGC3Q9UN70 934 aa16.4■□□□□ 0.22
LINC00339-207ENST00000634712 SMTNL1A8MU46 457 aa16.39■□□□□ 0.21
LINC00339-207ENST00000634712 CAPN9O14815 690 aa16.39■□□□□ 0.21
LINC00339-207ENST00000634712 PAPSS2O95340 614 aaPredicted RBP16.39■□□□□ 0.21
LINC00339-207ENST00000634712 LMNAP02545 664 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms