RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 SLC13A5Q86YT5 568 aaPredicted RBP14.52□□□□□ -0.09
CLK3-209ENST00000562670 SPATA4Q8NEY3 305 aa14.52□□□□□ -0.09
CLK3-209ENST00000562670 DQX1Q8TE96 717 aaKnown RBP14.52□□□□□ -0.09
CLK3-209ENST00000562670 HDAC7Q8WUI4 952 aa14.52□□□□□ -0.09
CLK3-209ENST00000562670 MS4A14Q96JA4 679 aa14.52□□□□□ -0.09
CLK3-209ENST00000562670 WDR6Q9NNW5 1121 aaKnown RBP14.52□□□□□ -0.09
CLK3-209ENST00000562670 ALG13Q9NP73 1137 aaKnown RBP14.52□□□□□ -0.09
CLK3-209ENST00000562670 GMIPQ9P107 970 aa14.52□□□□□ -0.09
CLK3-209ENST00000562670 RCOR3Q9P2K3 495 aaPredicted RBP14.52□□□□□ -0.09
CLK3-209ENST00000562670 UXTQ9UBK9 157 aaPredicted RBP14.52□□□□□ -0.09
CLK3-209ENST00000562670 NAALADL1Q9UQQ1 740 aa14.52□□□□□ -0.09
CLK3-209ENST00000562670 YBX2Q9Y2T7 364 aaKnown RBP14.52□□□□□ -0.09
CLK3-209ENST00000562670 ZNF638Q14966 1978 aaKnown RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 GOLGA6L10A0A0M3HER8 536 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 A0A1W2PQH9 124 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 C3orf70A6NLC5 250 aaPredicted RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 M0QYT0 321 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 PRRG1O14668 218 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 IRAK2O43187 625 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 LPXNO60711 386 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 SOAT2O75908 522 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 GLUD1P00367 558 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 FGGP02679 453 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 POU2F2P09086 479 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 RARAP10276 462 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 HMGA1P17096 107 aaKnown RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 TFE3P19532 575 aaPredicted RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 DNAJB1P25685 340 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 HOXA9P31269 272 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 CXCR3P49682 368 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 ZNF135P52742 658 aaPredicted RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 DEUP1Q05D60 604 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 TAF10Q12962 218 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 KLF1Q13351 362 aaPredicted RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 ZNF211Q13398 564 aaPredicted RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 CAMK1Q14012 370 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 TFDP3Q5H9I0 405 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 BRMS1LQ5PSV4 323 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 TXNRD3NBQ6F5E7 133 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 KLHDC10Q6PID8 442 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 RSRC2Q7L4I2 434 aaKnown RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 TAC4Q86UU9 113 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 ITIH5Q86UX2 942 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 SLC7A14Q8TBB6 771 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 PSMG2Q969U7 264 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 SERPINB11Q96P15 392 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 ZNF670Q9BS34 389 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 SNRNP25Q9BV90 132 aaKnown RBP14.51□□□□□ -0.09
CLK3-209ENST00000562670 PBX4Q9BYU1 374 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 PRDM16Q9HAZ2 1276 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 NMUR1Q9HB89 426 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.51□□□□□ -0.09
CLK3-209ENST00000562670 CALCOCO1Q9P1Z2 691 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 MSRAQ9UJ68 235 aa14.51□□□□□ -0.09
CLK3-209ENST00000562670 hCG_1818297A0A087WSY0 165 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 H0YGN5 161 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 GRM6O15303 877 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 RALAP11233 206 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 GBP1P32455 592 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 CDKN2BP42772 138 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 CLCN4P51793 760 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 EPHB3P54753 998 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 PITX1P78337 314 aaPredicted RBP14.5□□□□□ -0.09
CLK3-209ENST00000562670 MTA1Q13330 715 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 CYP1B1Q16678 543 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 ODF2Q5BJF6 829 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 ERMARDQ5T6L9 678 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 PLPP4Q5VZY2 271 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 SPOCD1Q6ZMY3 1216 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 SND1Q7KZF4 910 aaKnown RBP eCLIP14.5□□□□□ -0.09
CLK3-209ENST00000562670 TADA2BQ86TJ2 420 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 MAP7D3Q8IWC1 876 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 MMGT1Q8N4V1 131 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 C12orf50Q8NA57 414 aaPredicted RBP14.5□□□□□ -0.09
CLK3-209ENST00000562670 RNF139Q8WU17 664 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 FAF2Q96CS3 445 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 OSBPL8Q9BZF1 889 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 PLEKHA4Q9H4M7 779 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 FAM204AQ9H8W3 233 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 ZWILCHQ9H900 591 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 PIGVQ9NUD9 493 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.5□□□□□ -0.09
CLK3-209ENST00000562670 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.5□□□□□ -0.09
CLK3-209ENST00000562670 DDIT4Q9NX09 232 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 PCSK1NQ9UHG2 260 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 MTUS1Q9ULD2 1270 aa14.5□□□□□ -0.09
CLK3-209ENST00000562670 LRRD1A4D1F6 860 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 HIDE1A8MVS5 230 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 PAPLNO95428 1278 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 KDELR1P24390 212 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 KLRC2P26717 231 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 GJC1P36383 396 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 RGS19P49795 217 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 TWF1Q12792 350 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 IFRD2Q12894 506 aaPredicted RBP14.49□□□□□ -0.09
CLK3-209ENST00000562670 GPM6BQ13491 265 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 MTMR3Q13615 1198 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 PPP2R5DQ14738 602 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 LONRF2Q1L5Z9 754 aa14.49□□□□□ -0.09
CLK3-209ENST00000562670 SMTNL2Q2TAL5 461 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms