RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 LMBRD1Q9NUN5 540 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 FAM49BQ9NUQ9 324 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 CFAP97Q9P2B7 532 aa13.12□□□□□ -0.31
PRKDC-207ENST00000536483 THADAQ6YHU6 1953 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 SGK1O00141 431 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 SLC9A3R1O14745 358 aaPredicted RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 ALDH1A2O94788 518 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 KLF8O95600 359 aaPredicted RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 MBL2P11226 248 aaPredicted RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 PRKCSHP14314 528 aaPredicted RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CD58P19256 250 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 ACO1P21399 889 aaKnown RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 TIE1P35590 1138 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 DHPSP49366 369 aaPredicted RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 MAP3K7CLP57077 242 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 IRX4P78413 519 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 GCNT1Q02742 428 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CETN1Q12798 172 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 ORC1Q13415 861 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CAMK4Q16566 473 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CCDC40Q4G0X9 1142 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 RAB41Q5JT25 222 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 PPP1R26Q5T8A7 1209 aaPredicted RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 SH3PXD2AQ5TCZ1 1133 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CCDC186Q7Z3E2 898 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CYP2U1Q7Z449 544 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 C12orf40Q86WS4 652 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 DDX42Q86XP3 938 aaKnown RBP eCLIP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 IL17RCQ8NAC3 791 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 ANKRD52Q8NB46 1076 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 TXNDC5Q8NBS9 432 aaKnown RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 EHBP1Q8NDI1 1231 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 RLN3Q8WXF3 142 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 PIGKQ92643 395 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 FBXO32Q969P5 355 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 JAKMIP2Q96AA8 810 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 HEXIM2Q96MH2 286 aaKnown RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 ZDHHC4Q9NPG8 344 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 TMEM9BQ9NQ34 198 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CHORDC1Q9UHD1 332 aaPredicted RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CNTN6Q9UQ52 1028 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CTNND2Q9UQB3 1225 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 HELZP42694 1942 aaKnown RBP13.11□□□□□ -0.31
PRKDC-207ENST00000536483 CHD6Q8TD26 2715 aa13.11□□□□□ -0.31
PRKDC-207ENST00000536483 NUP205Q92621 2012 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 E2F8A0AVK6 867 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 CDX4O14627 284 aaPredicted RBP13.1□□□□□ -0.31
PRKDC-207ENST00000536483 COCHO43405 550 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 CLSTN1O94985 981 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 KAT7O95251 611 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 APODP05090 189 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 PAEPP09466 180 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 PSEN1P49768 467 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 ZNF252P-AS1Q0IIN9 211 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 KCNH2Q12809 1159 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 IRF2BP1Q8IU81 584 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 FRMD1Q8N878 549 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 OLIG1Q8TAK6 271 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 OTUB2Q96DC9 234 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 ARHGEF4Q9NR80 690 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 TLR8Q9NR97 1041 aaKnown RBP13.1□□□□□ -0.31
PRKDC-207ENST00000536483 CLIC5Q9NZA1 410 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 GON4LQ3T8J9 2241 aa13.1□□□□□ -0.31
PRKDC-207ENST00000536483 A0A0A0MRY4 1105 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 C1QTNF9BB2RNN3 333 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 GREM1O60565 184 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 ADH1CP00326 375 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 AFPP02771 609 aaKnown RBP13.09□□□□□ -0.31
PRKDC-207ENST00000536483 PROS1P07225 676 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 C1QTNF9P0C862 333 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 CHRM1P11229 460 aaPredicted RBP13.09□□□□□ -0.31
PRKDC-207ENST00000536483 ADH5P11766 374 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 SPINK2P20155 84 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 ERCC5P28715 1186 aaPredicted RBP13.09□□□□□ -0.31
PRKDC-207ENST00000536483 ADORA2BP29275 332 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 EIF2DP41214 584 aaKnown RBP13.09□□□□□ -0.31
PRKDC-207ENST00000536483 P2RY2P41231 377 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 GRIA2P42262 883 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 KIR2DL1P43626 348 aaPredicted RBP13.09□□□□□ -0.31
PRKDC-207ENST00000536483 PGFP49763 221 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 STX17P56962 302 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 KDSRQ06136 332 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 FOXC1Q12948 553 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 UAP1L1Q3KQV9 507 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 PKDCCQ504Y2 493 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 ZNF394Q53GI3 561 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 EOGTQ5NDL2 527 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 LY6G5CQ5SRR4 150 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 PM20D1Q6GTS8 502 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 RBM43Q6ZSC3 357 aaKnown RBP13.09□□□□□ -0.31
PRKDC-207ENST00000536483 ARMCX6Q7L4S7 300 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 GPRIN1Q7Z2K8 1008 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 TMEFF1Q8IYR6 380 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 SCML4Q8N228 414 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 NT5C1BQ96P26 610 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 POLMQ9NP87 494 aaPredicted RBP13.09□□□□□ -0.31
PRKDC-207ENST00000536483 GMIPQ9P107 970 aa13.09□□□□□ -0.31
PRKDC-207ENST00000536483 BCCIPQ9P287 314 aaKnown RBP eCLIP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms