RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 UEVLDQ8IX04 471 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 CHPFQ8IZ52 775 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 DNASE2BQ8WZ79 361 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 WDYHV1Q96HA8 205 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 MED30Q96HR3 178 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 FCRL5Q96RD9 977 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 TM2D2Q9BX73 214 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 DPH1Q9BZG8 443 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 FZD3Q9NPG1 666 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 PAPOLBQ9NRJ5 636 aaKnown RBP3.46□□□□□ -1.85
NUP54-208ENST00000508604 ANKRD6Q9Y2G4 727 aa3.46□□□□□ -1.85
NUP54-208ENST00000508604 SPATA31A1Q5TZJ5 1347 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 PRPF4O43172 522 aaKnown RBP eCLIP3.46□□□□□ -1.86
NUP54-208ENST00000508604 TLX3O43711 291 aaPredicted RBP3.46□□□□□ -1.86
NUP54-208ENST00000508604 EPN2O95208 641 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 IGKV3-20P01619 116 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 KRT10P13645 584 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 HGFP14210 728 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 HTR1BP28222 390 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 TNFRSF8P28908 595 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 MCM5P33992 734 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 MLH1P40692 756 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 PTDSS1P48651 473 aaKnown RBP3.46□□□□□ -1.86
NUP54-208ENST00000508604 ENTPD1P49961 510 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 GPC5P78333 572 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 KRTAP5-1Q6L8H4 278 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 NR2C2APQ86WQ0 139 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 ADGRF4Q8IZF3 695 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 NUDCD2Q8WVJ2 157 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 CHMP4CQ96CF2 233 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 SUCLG2Q96I99 432 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 MYLK2Q9H1R3 596 aa3.46□□□□□ -1.86
NUP54-208ENST00000508604 SIRT4Q9Y6E7 314 aaPredicted RBP3.46□□□□□ -1.86
NUP54-208ENST00000508604 IFITM10A6NMD0 228 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 PRSS47A8MTI9 375 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 ZNF814B7Z6K7 855 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 SPTLC2O15270 562 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 FGF2P09038 288 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 NCLP19338 710 aaKnown RBP3.45□□□□□ -1.86
NUP54-208ENST00000508604 TFEBP19484 476 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 RPS6KB1P23443 525 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 POLD2P49005 469 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 ITGA8P53708 1063 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 P2RX3P56373 397 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 DEUP1Q05D60 604 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 STK3Q13188 491 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 MTA1Q13330 715 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 ARHGEF7Q14155 803 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 ZDHHC24Q6UX98 284 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 SPATA2LQ8IUW3 424 aaPredicted RBP3.45□□□□□ -1.86
NUP54-208ENST00000508604 WIPF2Q8TF74 440 aaPredicted RBP3.45□□□□□ -1.86
NUP54-208ENST00000508604 MSRB1Q9NZV6 116 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 WNT16Q9UBV4 365 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 HDAC9Q9UKV0 1011 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 ASAP1Q9ULH1 1129 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 PCDHA12Q9UN75 941 aa3.45□□□□□ -1.86
NUP54-208ENST00000508604 HEMK1Q9Y5R4 338 aaPredicted RBP3.45□□□□□ -1.86
NUP54-208ENST00000508604 ZNF335Q9H4Z2 1342 aaPredicted RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 MBD3L4A6NDZ8 208 aaPredicted RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 MBD3L3A6NE82 208 aaPredicted RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 AQP7P3A6NL99 342 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 H7C4K7 107 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 RRP9O43818 475 aaKnown RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 GAS8-AS1O95177 125 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 PARP1P09874 1014 aaKnown RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 PF4V1P10720 104 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 EN2P19622 333 aaPredicted RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 EIF4A1P60842 406 aaKnown RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 WDR5P61964 334 aaKnown RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 KCTD20Q7Z5Y7 419 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 P3H2Q8IVL5 708 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 C11orf44Q8N8P7 122 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 DIS3LQ8TF46 1054 aaKnown RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 IGFBPL1Q8WX77 278 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 LPAR1Q92633 364 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 NEUROG1Q92886 237 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 KAZALD1Q96I82 304 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 HIST1H2AAQ96QV6 131 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 SMURF2Q9HAU4 748 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 TCF7L1Q9HCS4 588 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 GJB4Q9NTQ9 266 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 IPO11Q9UI26 975 aaKnown RBP3.44□□□□□ -1.86
NUP54-208ENST00000508604 PCDHA7Q9UN72 937 aa3.44□□□□□ -1.86
NUP54-208ENST00000508604 SLC22A23A1A5C7 686 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 H3BML4 177 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 RRHO14718 337 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 PLA2G2AP14555 144 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 KLRC1P26715 233 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 SLC7A1P30825 629 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 GAS1P54826 345 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 RRP1P56182 461 aaKnown RBP3.43□□□□□ -1.86
NUP54-208ENST00000508604 RPL36AP83881 106 aaKnown RBP3.43□□□□□ -1.86
NUP54-208ENST00000508604 SLC29A2Q14542 456 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 SLC39A5Q6ZMH5 540 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 RBM44Q6ZP01 1051 aaKnown RBP3.43□□□□□ -1.86
NUP54-208ENST00000508604 KAT2BQ92831 832 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 MIB2Q96AX9 1013 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 STK31Q9BXU1 1019 aa3.43□□□□□ -1.86
NUP54-208ENST00000508604 DHX36Q9H2U1 1008 aaKnown RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms