RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 WDTC1Q8N5D0 677 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 SP7Q8TDD2 431 aaPredicted RBP11.23□□□□□ -0.61
RTN3-201ENST00000338850 LRRC8CQ8TDW0 803 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 CPT1BQ92523 772 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 RMDN2Q96LZ7 410 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 UHRF1Q96T88 793 aaPredicted RBP11.23□□□□□ -0.61
RTN3-201ENST00000338850 PRDM16Q9HAZ2 1276 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.23□□□□□ -0.611e-6■■■■■ 88.9
RTN3-201ENST00000338850 LMCD1Q9NZU5 365 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 ANKFY1Q9P2R3 1169 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 RABGEF1Q9UJ41 708 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 ZNF180Q9UJW8 692 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 PHTF1Q9UMS5 762 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 USTQ9Y2C2 406 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 C15orf41Q9Y2V0 281 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 INSL6Q9Y581 213 aa11.23□□□□□ -0.61
RTN3-201ENST00000338850 COL4A4P53420 1690 aaPredicted RBP11.23□□□□□ -0.61
RTN3-201ENST00000338850 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.22□□□□□ -0.61
RTN3-201ENST00000338850 F8VP50 259 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 KIF1CO43896 1103 aaKnown RBP11.22□□□□□ -0.61
RTN3-201ENST00000338850 DNAJC6O75061 913 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 SETSIPP0DME0 302 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 KRT3P12035 628 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 P4HA1P13674 534 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 BRD2P25440 801 aaKnown RBP11.22□□□□□ -0.61
RTN3-201ENST00000338850 PSMA2P25787 234 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 MARK3P27448 753 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 SCNN1AP37088 669 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 VPS41P49754 854 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 KCNQ1P51787 676 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 MYL6P60660 151 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 ATP11AP98196 1134 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 SLC18A2Q05940 514 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 INCA1Q0VD86 236 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 PDIA2Q13087 525 aaKnown RBP11.22□□□□□ -0.61
RTN3-201ENST00000338850 TFDP2Q14188 446 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 CRYMQ14894 314 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 AAK1Q2M2I8 961 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 PTPN20Q4JDL3 420 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 FAM133BQ5BKY9 247 aaKnown RBP11.22□□□□□ -0.61
RTN3-201ENST00000338850 WASHC2DQ5SRD0 308 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 FYB2Q5VWT5 728 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 TBC1D1Q86TI0 1168 aaPredicted RBP11.22□□□□□ -0.61
RTN3-201ENST00000338850 PDIK1LQ8N165 341 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 RAB3IL1Q8TBN0 382 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 ACTL9Q8TC94 416 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 MGARPQ8TDB4 240 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 TEKT4Q8WW24 435 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 LRRC39Q96DD0 335 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 RSRC1Q96IZ7 334 aaKnown RBP11.22□□□□□ -0.61
RTN3-201ENST00000338850 TBCBQ99426 244 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 MTMR12Q9C0I1 747 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 ASB7Q9H672 318 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 ERAP1Q9NZ08 941 aa11.22□□□□□ -0.61
RTN3-201ENST00000338850 MICAL3Q7RTP6 2002 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 COL1A2P08123 1366 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 IQANK1A0A1B0GTG1 560 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 MBLAC1A4D2B0 266 aaPredicted RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 SGK1O00141 431 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 MCF2LO15068 1137 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 ATP2C2O75185 946 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 CILPO75339 1184 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 CST3P01034 146 aaPredicted RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 CALCAP01258 141 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 LMNAP02545 664 aaKnown RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 CHRNA1P02708 482 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 TROVE2P10155 538 aaKnown RBP eCLIP11.21□□□□□ -0.61
RTN3-201ENST00000338850 MCF2P10911 925 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 VDRP11473 427 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 KRT10P13645 584 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 KRT15P19012 456 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 TGM2P21980 687 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 CA4P22748 312 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 GBP2P32456 591 aaPredicted RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 SSR1P43307 286 aaKnown RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 GPX6P59796 221 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 KCNJ2P63252 427 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 OTUD4Q01804 1114 aaKnown RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 MGAT3Q09327 533 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 LAMTOR4Q0VGL1 99 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 MYO1EQ12965 1108 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 PDK2Q15119 407 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 NOMO1Q15155 1222 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 GRIK4Q16099 956 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 ZNF667Q5HYK9 610 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 MARCH8Q5T0T0 291 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 HHATQ5VTY9 493 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 TAF2Q6P1X5 1199 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 XYLT1Q86Y38 959 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 APLFQ8IW19 511 aaPredicted RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 TRIM42Q8IWZ5 723 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 ZBED8Q8IZ13 594 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 ENDOVQ8N8Q3 282 aaKnown RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 BANPQ8N9N5 519 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 GLIS1Q8NBF1 620 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 GDAP1Q8TB36 358 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 PYROXD1Q8WU10 500 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 PRPF31Q8WWY3 499 aaKnown RBP11.21□□□□□ -0.61
RTN3-201ENST00000338850 TFAP2BQ92481 460 aa11.21□□□□□ -0.61
RTN3-201ENST00000338850 TOP1MTQ969P6 601 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms