RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 PLCB3Q01970 1234 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 TAF1CQ15572 869 aaPredicted RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 ARHGAP44Q17R89 818 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 SETMARQ53H47 684 aaPredicted RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 HSP90B2PQ58FF3 399 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 FAXCQ5TGI0 409 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 EEF1DP3Q658K8 133 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 DENND2CQ68D51 928 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 NAPRTQ6XQN6 538 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 CCDC63Q8NA47 563 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 MCPH1Q8NEM0 835 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 RBM15Q96T37 977 aaKnown RBP eCLIP8.16□□□□□ -1.11e-6■■■□□ 18.6
CNOT4-201ENST00000315544 POLR3BQ9NW08 1133 aaPredicted RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 CCPG1Q9ULG6 757 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 TNRC6BQ9UPQ9 1833 aaKnown RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 SEPT4O43236 478 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 CCDC172P0C7W6 258 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 CRHR1P34998 444 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 RGS2P41220 211 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 PTPN9P43378 593 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 ZKSCAN8Q15776 578 aaPredicted RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 KRT71Q3SY84 523 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 IZUMO3Q5VZ72 239 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 ADAT2Q7Z6V5 191 aaKnown RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 PHYKPLQ8IUZ5 450 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 CHPFQ8IZ52 775 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 UBL4BQ8N7F7 174 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 UBLCP1Q8WVY7 318 aaPredicted RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 TRIM11Q96F44 468 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 QKIQ96PU8 341 aaKnown RBP eCLIP8.16□□□□□ -1.14e-9■■■■□ 24.8
CNOT4-201ENST00000315544 RMDN3Q96TC7 470 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 TEX13BQ9BXU2 312 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 ZNF395Q9H8N7 513 aaPredicted RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 BMP2KQ9NSY1 1161 aaPredicted RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 STX18Q9P2W9 335 aaKnown RBP8.16□□□□□ -1.1
CNOT4-201ENST00000315544 FBXW11Q9UKB1 542 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 TBX21Q9UL17 535 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 COL1A2P08123 1366 aa8.16□□□□□ -1.1
CNOT4-201ENST00000315544 SPTLC1O15269 473 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TOM1L1O75674 476 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TGFB3P10600 412 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 CCL5P13501 91 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 ARCN1P48444 511 aaKnown RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 CCNHP51946 323 aaPredicted RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 GBP7Q8N8V2 638 aaPredicted RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 CAGE1Q8TC20 777 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 FCRL3Q96P31 734 aaPredicted RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 ELAC2Q9BQ52 826 aaKnown RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TNFRSF12AQ9NP84 129 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 GDAP2Q9NXN4 497 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 PES1O00541 588 aaKnown RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TBCAO75347 108 aaKnown RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TRPA1O75762 1119 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TOP3BO95985 862 aaKnown RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TBXAS1P24557 533 aaPredicted RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 GEMIN4P57678 1058 aaKnown RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 ACTR3P61158 418 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 PIGHQ14442 188 aaPredicted RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 LRRC14Q15048 493 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 DCAF8Q5TAQ9 597 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 CCDC117Q8IWD4 279 aaPredicted RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 CEP120Q8N960 986 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 SLCO4A1Q96BD0 722 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 FAM213AQ9BRX8 229 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 IP6K2Q9UHH9 426 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 SMG5Q9UPR3 1016 aaKnown RBP8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TTC3P53804 2025 aa8.15□□□□□ -1.1
CNOT4-201ENST00000315544 TMEM265A0A087WTH1 108 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 ZWINTO95229 277 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 AP3M2P53677 418 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 LAMTOR4Q0VGL1 99 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 TRIM32Q13049 653 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 TRAF1Q13077 416 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 PAFAH1B3Q15102 231 aaKnown RBP8.15□□□□□ -1.11
CNOT4-201ENST00000315544 PLPP6Q8IY26 295 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 CRYBG2Q8N1P7 616 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 CCHCR1Q8TD31 782 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 NSMCE1Q8WV22 266 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 APOPT1Q96IL0 206 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 FAM118BQ9BPY3 351 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 CSNK1G1Q9HCP0 422 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 RIMS3Q9UJD0 308 aa8.15□□□□□ -1.11
CNOT4-201ENST00000315544 AGO2Q9UKV8 859 aaKnown RBP8.15□□□□□ -1.11
CNOT4-201ENST00000315544 G3V3G9 751 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 ACKR2O00590 384 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 PAPSS1O43252 624 aaPredicted RBP8.14□□□□□ -1.11
CNOT4-201ENST00000315544 KIF1CO43896 1103 aaKnown RBP8.14□□□□□ -1.11
CNOT4-201ENST00000315544 PROCP04070 461 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 INHAP05111 366 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 GSTA2P09210 222 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 INHBBP09529 407 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 SSTR1P30872 391 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 HPDP32754 393 aaPredicted RBP8.14□□□□□ -1.11
CNOT4-201ENST00000315544 TAP1Q03518 808 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 SNCBQ16143 134 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 OGFRL1Q5TC84 451 aaPredicted RBP8.14□□□□□ -1.11
CNOT4-201ENST00000315544 CCDC181Q5TID7 509 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 SH3RF2Q8TEC5 729 aa8.14□□□□□ -1.11
CNOT4-201ENST00000315544 NT5C1BQ96P26 610 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms