RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TWF1Q12792 350 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF792Q3KQV3 632 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ATG9BQ674R7 924 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 RNF44Q7L0R7 432 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF554Q86TJ5 538 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 TMEM17Q86X19 198 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 CCDC71Q8IV32 467 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 GIPC3Q8TF64 312 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 HTRA1Q92743 480 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 TRNT1Q96Q11 434 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF334Q9HCZ1 680 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ASNSD1Q9NWL6 643 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 EIF3KQ9UBQ5 218 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 NDRG2Q9UN36 371 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 INVSQ9Y283 1065 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PLEKHM1Q9Y4G2 1056 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PLK4O00444 970 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 POLR1CO15160 346 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MED7O43513 233 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 SCGB1D2O95969 90 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MOCS2O96007 188 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 CPA2P48052 419 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 GSPT2Q8IYD1 628 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 CLYBLQ8N0X4 340 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 C12orf45Q8N5I9 185 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZSCAN1Q8NBB4 408 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 OR7D4Q8NG98 312 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 IL1RAPL1Q9NZN1 696 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ERBB4Q15303 1308 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF233A6NK53 670 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 EIF3DO15371 548 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 RBM34P42696 430 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MAGOHP61326 146 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 TUBA4AP68366 448 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 SCARB2Q14108 478 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM102BQ5T8I3 360 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 WDR74Q6RFH5 385 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZBTB33Q86T24 672 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 ZC3HC1Q86WB0 502 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 CENPLQ8N0S6 344 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 OR5T3Q8NGG3 340 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 TCEAL3Q969E4 200 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 RMND5BQ96G75 393 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 OR2M4Q96R27 311 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 TUBGCP5Q96RT8 1024 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 IRF2BPLQ9H1B7 796 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PIF1Q9H611 641 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 MARCOQ9UEW3 520 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 PSME2Q9UL46 239 aa7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 NOP16Q9Y3C1 178 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-201ENST00000313860 SF3B1O75533 1304 aaKnown RBP eCLIP7.85□□□□□ -1.151e-8■■■■■ 160.4
LIMCH1-201ENST00000313860 TEX14Q8IWB6 1497 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 TTC21BQ7Z4L5 1316 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 GABBR2O75899 941 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PTPREP23469 700 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 GCLMP48507 274 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 ARFIP1P53367 373 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 ARHGEF6Q15052 776 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 NRF1Q16656 503 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PCNX4Q63HM2 1172 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 NUP54Q7Z3B4 507 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 HID1Q8IV36 788 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 HPS3Q969F9 1004 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 GANQ9H2C0 597 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 GMNCA6NCL1 334 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 H0YCG3 227 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 RHOP08100 348 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 NCKAP1LP55160 1127 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CDH6P55285 790 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 NOMO3P69849 1222 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 MYBPC1Q00872 1141 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CAV1Q03135 178 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 NOMO1Q15155 1222 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 NOMO2Q5JPE7 1267 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 KRBOX4Q5JUW0 171 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 RHOT2Q8IXI1 618 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 NDRG1Q92597 394 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 C16orf58Q96GQ5 468 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PRMT1Q99873 361 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 GOLPH3Q9H4A6 298 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 ANGEL1Q9UNK9 670 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CARNS1A5YM72 827 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CCNKO75909 580 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 HPGDP15428 266 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CDH3P22223 829 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 VAMP2P63027 116 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CENPIQ92674 756 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PDGFDQ9GZP0 370 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 DUSP22Q9NRW4 184 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 RAB23Q9ULC3 237 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 TOM1O60784 492 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 S100PP25815 95 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 VHLP40337 213 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 MXI1P50539 228 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PURAQ00577 322 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF267Q14586 743 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 GRK1Q15835 563 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PTGISQ16647 500 aa7.84□□□□□ -1.15
LIMCH1-201ENST00000313860 PHKG1Q16816 387 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms