RNA–Protein interactions for RNA: ENST00000307106.3

SMIM4-201, Transcript of small integral membrane protein 4, humanhuman

TSL 2 BASIC

Gene SMIM4, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-201ENST00000307106 RTP5Q14D33 572 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 CACUL1Q86Y37 369 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 CCDC83Q8IWF9 413 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 FAM181AQ8N9Y4 354 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 PRCCQ92733 491 aaPredicted RBP12.54□□□□□ -0.4
SMIM4-201ENST00000307106 IGSF8Q969P0 613 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 HPDLQ96IR7 371 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 NRSN2Q9GZP1 204 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 ELOVL4Q9GZR5 314 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 NACA2Q9H009 215 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 MARK1Q9P0L2 795 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 WDR35Q9P2L0 1181 aa12.54□□□□□ -0.4
SMIM4-201ENST00000307106 NYNRINQ9P2P1 1898 aaKnown RBP12.54□□□□□ -0.4
SMIM4-201ENST00000307106 H0Y8X5 98 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 LDHAP00338 332 aaKnown RBP12.53□□□□□ -0.4
SMIM4-201ENST00000307106 CISD3P0C7P0 127 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 ACADMP11310 421 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 IL12RB1P42701 662 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 GRIA4P48058 902 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 TUBP50607 506 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 ZNF132P52740 706 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 CCDC173Q0VFZ6 552 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 MCM6Q14566 821 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 SNX30Q5VWJ9 437 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 LAYNQ6UX15 382 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 HTR3DQ70Z44 454 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 FAM124AQ86V42 546 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 FAM184AQ8NB25 1140 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 FGF11Q92914 225 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 HVCN1Q96D96 273 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 CALML4Q96GE6 196 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 TMEM176AQ96HP8 235 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 MMS19Q96T76 1030 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 ARID3AQ99856 593 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 ZNF518BQ9C0D4 1074 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 PCED1AQ9H1Q7 454 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 PDE11AQ9HCR9 933 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 BLOC1S4Q9NUP1 217 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 NME7Q9Y5B8 376 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 PTPRJQ12913 1337 aa12.53□□□□□ -0.4
SMIM4-201ENST00000307106 TDRD6O60522 2096 aaKnown RBP12.52□□□□□ -0.4
SMIM4-201ENST00000307106 GOLGA8IPA6NC78 632 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 GOLGA8JA6NMD2 632 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 B8ZZF3 427 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 CLDN5O00501 218 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 ENC1O14682 589 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 PAPSS1O43252 624 aaPredicted RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 SYNCRIPO60506 623 aaKnown RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 RFPL3O75679 317 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 CDK4P11802 303 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 NEK4P51957 841 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 HES3Q5TGS1 186 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 ZNF720Q7Z2F6 126 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 FMNL3Q8IVF7 1028 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 SPACA3Q8IXA5 215 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 KRI1Q8N9T8 703 aaKnown RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 SCAMP5Q8TAC9 235 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 NOC3LQ8WTT2 800 aaKnown RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 BHMTQ93088 406 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 WBP1Q96G27 269 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 ANKRD36BP1Q96IX9 119 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 MRPL45Q9BRJ2 306 aaKnown RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 LLPHQ9BRT6 129 aaKnown RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 SEMA4CQ9C0C4 833 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 SNX25Q9H3E2 840 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 C6orf106Q9H6K1 298 aaPredicted RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 TM9SF3Q9HD45 589 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 OSGEPQ9NPF4 335 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 THAP10Q9P2Z0 257 aaPredicted RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 EXOC7Q9UPT5 735 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.52□□□□□ -0.41
SMIM4-201ENST00000307106 PTPN13Q12923 2485 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 DOCK9Q9BZ29 2069 aa12.52□□□□□ -0.41
SMIM4-201ENST00000307106 CBX4O00257 560 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 NPC1O15118 1278 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 SLC26A4O43511 780 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 BRINP1O60477 761 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 GREM1O60565 184 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 PPP1R37O75864 691 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 C1SP09871 688 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 PTPN1P18031 435 aaKnown RBP12.51□□□□□ -0.41
SMIM4-201ENST00000307106 ACTN2P35609 894 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 GNL1P36915 607 aaPredicted RBP12.51□□□□□ -0.41
SMIM4-201ENST00000307106 COPAP53621 1224 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 CDH8P55286 799 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 HMGN5P82970 282 aaKnown RBP12.51□□□□□ -0.41
SMIM4-201ENST00000307106 RHDQ02161 417 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 KCNA1Q09470 495 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 DNAJC3Q13217 504 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 ORC1Q13415 861 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 ENPP2Q13822 863 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 USP49Q70CQ1 688 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 SFR1Q86XK3 245 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 OR6B3Q8NGW1 331 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 RAD54LQ92698 747 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 CNDP2Q96KP4 475 aaKnown RBP12.51□□□□□ -0.41
SMIM4-201ENST00000307106 KCNK16Q96T55 309 aa12.51□□□□□ -0.41
SMIM4-201ENST00000307106 HNRNPABQ99729 332 aaKnown RBP12.51□□□□□ -0.41
SMIM4-201ENST00000307106 B3GNT5Q9BYG0 378 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms