RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 DCXO43602 365 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 NPTXRO95502 500 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 RPL10P27635 214 aaKnown RBP13.47□□□□□ -0.25
SNX1-201ENST00000261889 PKNOX1P55347 436 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 C1QBPQ07021 282 aaKnown RBP13.47□□□□□ -0.25
SNX1-201ENST00000261889 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.47□□□□□ -0.25
SNX1-201ENST00000261889 MTHFD1LQ6UB35 978 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 DEFB107AQ8IZN7 70 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 RNF149Q8NC42 400 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 GATA6Q92908 595 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 ERLEC1Q96DZ1 483 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 INO80BQ9C086 356 aaPredicted RBP13.47□□□□□ -0.25
SNX1-201ENST00000261889 VPS11Q9H270 941 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 ARHGAP28Q9P2N2 729 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 USP18Q9UMW8 372 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 MTO1Q9Y2Z2 717 aaKnown RBP13.47□□□□□ -0.25
SNX1-201ENST00000261889 CNTNAP1P78357 1384 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 SPDYE16A6NNV3 312 aaPredicted RBP13.47□□□□□ -0.25
SNX1-201ENST00000261889 METTL18O95568 372 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 KRT81Q14533 505 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 DLG2Q15700 870 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 PPM1LQ5SGD2 360 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 TDRPQ86YL5 185 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 TP53INP2Q8IXH6 220 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 SNRNP27Q8WVK2 155 aaKnown RBP13.47□□□□□ -0.25
SNX1-201ENST00000261889 PRPF31Q8WWY3 499 aaKnown RBP13.47□□□□□ -0.25
SNX1-201ENST00000261889 AGAP3Q96P47 875 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 SAR1AQ9NR31 198 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 SENP1Q9P0U3 644 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 STRIP2Q9ULQ0 834 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 HES2Q9Y543 173 aa13.47□□□□□ -0.25
SNX1-201ENST00000261889 HMX2A2RU54 273 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 STX16-NPEPL1H3BU86 382 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 SERPINB5P36952 375 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 EEF1DP3Q658K8 133 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 GPC2Q8N158 579 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 SLC44A1Q8WWI5 657 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 SDCBP2Q9H190 292 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 LIN28AQ9H9Z2 209 aaKnown RBP13.46□□□□□ -0.25
SNX1-201ENST00000261889 INPP5FQ9Y2H2 1132 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 TRAFD1O14545 582 aaPredicted RBP13.46□□□□□ -0.25
SNX1-201ENST00000261889 AIM2O14862 343 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 HNRNPRO43390 633 aaKnown RBP13.46□□□□□ -0.25
SNX1-201ENST00000261889 STBD1O95210 358 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 GBE1Q04446 702 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 CAPSQ13938 189 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.46□□□□□ -0.25
SNX1-201ENST00000261889 SPATA6LQ8N4H0 392 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 SAMD3Q8N6K7 520 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 NKD2Q969F2 451 aaPredicted RBP13.46□□□□□ -0.25
SNX1-201ENST00000261889 HEXIM2Q96MH2 286 aaKnown RBP13.46□□□□□ -0.25
SNX1-201ENST00000261889 NDNQ99608 321 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 APOL2Q9BQE5 337 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 CXCL16Q9H2A7 254 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 TLE6Q9H808 572 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 CAB39LQ9H9S4 337 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 TTLL3Q9Y4R7 772 aa13.46□□□□□ -0.25
SNX1-201ENST00000261889 OTOFQ9HC10 1997 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 USP34Q70CQ2 3546 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 WDR27A2RRH5 827 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 MAGEA13PA6NCF6 341 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 ENTPD3O75355 529 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 DGAT1O75907 488 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 RAG1P15918 1043 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 CALRP27797 417 aaKnown RBP13.46□□□□□ -0.26
SNX1-201ENST00000261889 TCF7P36402 384 aaPredicted RBP13.46□□□□□ -0.26
SNX1-201ENST00000261889 INHBCP55103 352 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 KRT76Q01546 638 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 CCDC142Q17RM4 750 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 FASTKD1Q53R41 847 aaKnown RBP13.46□□□□□ -0.26
SNX1-201ENST00000261889 CIAPIN1Q6FI81 312 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 FBXL19Q6PCT2 694 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 UNC5AQ6ZN44 842 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 SAMD7Q7Z3H4 446 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 SULF1Q8IWU6 871 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 SCUBE3Q8IX30 993 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 GDPD5Q8WTR4 605 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 DEPDC1BQ8WUY9 529 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 ATP6V0A1Q93050 837 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 CLMNQ96JQ2 1002 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 GORASP1Q9BQQ3 440 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 ADPGKQ9BRR6 497 aa13.46□□□□□ -0.26
SNX1-201ENST00000261889 LIN7AO14910 233 aaPredicted RBP13.45□□□□□ -0.26
SNX1-201ENST00000261889 RTN3O95197 1032 aaPredicted RBP13.45□□□□□ -0.26
SNX1-201ENST00000261889 ZBED1O96006 694 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 PDGFRAP16234 1089 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 KCNA2P16389 499 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 JAK3P52333 1124 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 CRLF3Q8IUI8 442 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 CLEC4CQ8WTT0 213 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 SLC7A3Q8WY07 619 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 EZH1Q92800 747 aaPredicted RBP13.45□□□□□ -0.26
SNX1-201ENST00000261889 IFT43Q96FT9 208 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 CNBD2Q96M20 576 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 HERC5Q9UII4 1024 aaKnown RBP13.45□□□□□ -0.26
SNX1-201ENST00000261889 DNAJC6O75061 913 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 RFPL1O75677 317 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 FGFR3P22607 806 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 OCRLQ01968 901 aa13.45□□□□□ -0.26
SNX1-201ENST00000261889 N4BP2L1Q5TBK1 243 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms