RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 NMT1P30419 496 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CARSP49589 748 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 SLC12A3P55017 1021 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ARPP19P56211 112 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 SMIM11AP58511 58 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 C11orf88Q6PI97 169 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 C3orf62Q6ZUJ4 267 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 EEPD1Q7L9B9 569 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 AGR3Q8TD06 166 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ZNF333Q96JL9 665 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 PCYOX1Q9UHG3 505 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 PCDHA3Q9Y5H8 950 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 SIGLEC16A6NMB1 481 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 APOC4-APOC2K7ER74 178 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 DYNC1LI2O43237 492 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 APOC2P02655 101 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ALDH2P05091 517 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ITGAVP06756 1048 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 TRIM49P0CI25 452 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 TRIM49CP0CI26 452 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 IFNAR2P48551 515 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 EN1Q05925 392 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 GRAMD1BQ3KR37 738 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 SPATS1Q496A3 300 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CELF3Q5SZQ8 465 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 OTOP1Q7RTM1 612 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 MCUQ8NE86 351 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 MORF4L1Q9UBU8 362 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 G3BP2Q9UN86 482 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 SPATA31C2B4DYI2 1134 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ALADP13716 330 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 LCP1P13796 627 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 NOS2P35228 1153 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 PGM1P36871 562 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 USP10Q14694 798 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 PTPROQ16827 1216 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 TAGAPQ8N103 731 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 E2F7Q96AV8 911 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 COG4Q9H9E3 785 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 EFCAB1Q9HAE3 211 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 THAP1Q9NVV9 213 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 DDX60Q8IY21 1712 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 IRGMA1A4Y4 181 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 EEF1B2P24534 225 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CXCR5P32302 372 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 HNRNPH2P55795 449 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 VSIG10LQ86VR7 867 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ATG4CQ96DT6 458 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 AKAP7Q9P0M2 348 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ATRNL1Q5VV63 1379 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 RAD51BO15315 384 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 RFC2P35250 354 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 GCKP35557 465 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ERVK-9P63128 1117 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ERVK-24P63145 666 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 TXNDC11Q6PKC3 985 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CATSPERGQ6ZRH7 1159 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 SH3GL3Q99963 347 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 C2orf49Q9BVC5 232 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 C10orf88Q9H8K7 445 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 C20orf96Q9NUD7 363 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 DYRK1BQ9Y463 629 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 MYH4Q9Y623 1939 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ROBO1Q9Y6N7 1651 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 RNF103-CHMP3A0A140T963 221 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 TK2O00142 265 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 PRMT3O60678 531 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 IGSF6O95976 241 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CSH1P0DML2 217 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CSH2P0DML3 217 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 RRM2P31350 389 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ARL4DP49703 201 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 POU4F1Q01851 419 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CRY1Q16526 586 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 HP1BP3Q5SSJ5 553 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 KCTD16Q68DU8 428 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 VSTM1Q6UX27 236 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 RNF25Q96BH1 459 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 MTMR9Q96QG7 549 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 UBIAD1Q9Y5Z9 338 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CAMTA1Q9Y6Y1 1673 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ATP1A1P05023 1023 aaKnown RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ZNF7P17097 686 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 PSMD7P51665 324 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 HIBCHQ6NVY1 386 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-202ENST00000261517 KCTD13Q8WZ19 329 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 TMEM143Q96AN5 459 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 PGM2Q96G03 612 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 C12orf42Q96LP6 360 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CYP1A2P05177 515 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 SNHG28P0DPA3 235 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 NCAM1P13591 858 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 CASP2P42575 452 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 ST3GAL1Q11201 340 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 GRIK3Q13003 919 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 MPP3Q13368 585 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 MFSD10Q14728 455 aa4.44□□□□□ -1.7
VPS13C-202ENST00000261517 FAM110CQ1W6H9 321 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms