RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 DHRS4L1P0CG22 281 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 RAP1GDS1P52306 607 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 PSMC1P62191 440 aaKnown RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 MRPS5P82675 430 aaKnown RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 DENND1BQ6P3S1 775 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 SPATA24Q86W54 205 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.05■□□□□ 0.64
UPF1-210ENST00000600689 TMEM35BQ8NCS4 154 aa19.05■□□□□ 0.64
UPF1-210ENST00000600689 MYH9P35579 1960 aaKnown RBP19.05■□□□□ 0.64
UPF1-210ENST00000600689 KDELR1P24390 212 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 HMGCS2P54868 508 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 SPDYAQ5MJ70 313 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 DRICH1Q6PGQ1 229 aaPredicted RBP19.04■□□□□ 0.64
UPF1-210ENST00000600689 C15orf39Q6ZRI6 1047 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 HPS6Q86YV9 775 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 PPP2R3CQ969Q6 453 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 NR1H4Q96RI1 486 aaPredicted RBP19.04■□□□□ 0.64
UPF1-210ENST00000600689 SSU72Q9NP77 194 aaKnown RBP19.04■□□□□ 0.64
UPF1-210ENST00000600689 SMYD2Q9NRG4 433 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 TBC1D22BQ9NU19 505 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 PLA2G4CQ9UP65 541 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 DNAJC16Q9Y2G8 782 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 MAGEC1O60732 1142 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 TGFB2P61812 414 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 SCYL2Q6P3W7 929 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 PAOXQ6QHF9 649 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 SLC16A10Q8TF71 515 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 HIC2Q96JB3 615 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 WRNIP1Q96S55 665 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 FAM192AQ9GZU8 254 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 TTLL13PA6NNM8 815 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 KCNN4O15554 427 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 CALB1P05937 261 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 TFAMQ00059 246 aaKnown RBP19.04■□□□□ 0.64
UPF1-210ENST00000600689 STX3Q13277 289 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 EFHC1Q5JVL4 640 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 CHSY1Q86X52 802 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 WDTC1Q8N5D0 677 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 KCNK4Q9NYG8 393 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 LMCD1Q9NZU5 365 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 SLC4A7Q9Y6M7 1214 aa19.04■□□□□ 0.64
UPF1-210ENST00000600689 A0A088AWK7 358 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 CAPN8A6NHC0 703 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 ZC3H11AO75152 810 aaKnown RBP eCLIP19.03■□□□□ 0.64
UPF1-210ENST00000600689 KRT37O76014 449 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 TGDSO95455 350 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 KRT19P08727 400 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 USP46P62068 366 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PRKG1Q13976 671 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 GSTA3Q16772 222 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 DHDDSQ86SQ9 333 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 SLC26A11Q86WA9 606 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 NETO2Q8NC67 525 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 S100A14Q9HCY8 104 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 CISHQ9NSE2 258 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 RNF146Q9NTX7 359 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 IL1RAPL1Q9NZN1 696 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 CNTN3Q9P232 1028 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PLLPQ9Y342 182 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 K7ERI5 159 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 SNRPAP09012 282 aaKnown RBP19.03■□□□□ 0.64
UPF1-210ENST00000600689 CSH1P0DML2 217 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 CSH2P0DML3 217 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 RAG1P15918 1043 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 CDH6P55285 790 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PIGHQ14442 188 aaPredicted RBP19.03■□□□□ 0.64
UPF1-210ENST00000600689 PSMD6Q15008 389 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PTPN20Q4JDL3 420 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 TTC39BQ5VTQ0 682 aaPredicted RBP19.03■□□□□ 0.64
UPF1-210ENST00000600689 ATG16L1Q676U5 607 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PIP4K2CQ8TBX8 421 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 VCPIP1Q96JH7 1222 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 IFT122Q9HBG6 1241 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 MAN1C1Q9NR34 630 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PCDHGB4Q9UN71 923 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PCDHGB5Q9Y5G0 923 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PCDHA10Q9Y5I2 948 aa19.03■□□□□ 0.64
UPF1-210ENST00000600689 PEX10O60683 326 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 INHBCP55103 352 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 CDH8P55286 799 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 CRADDP78560 199 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 PPCSQ9HAB8 311 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 DDX56Q9NY93 547 aaKnown RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 HBS1LQ9Y450 684 aaKnown RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 C3orf70A6NLC5 250 aaPredicted RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 BUD23O43709 281 aaKnown RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 EDN1P05305 212 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 BACE1P56817 501 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 SNRPFP62306 86 aaKnown RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 ROR1Q01973 937 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 PRKCEQ02156 737 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 DNAL1Q4LDG9 190 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 SNRNP48Q6IEG0 339 aaKnown RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 DPY19L2Q6NUT2 758 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 CASC4Q6P4E1 433 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 NIPA1Q7RTP0 329 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 CCDC60Q8IWA6 550 aaPredicted RBP19.02■□□□□ 0.64
UPF1-210ENST00000600689 DEFB107AQ8IZN7 70 aa19.02■□□□□ 0.64
UPF1-210ENST00000600689 RNF148Q8N7C7 305 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms