RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TRPM5Q9NZQ8 1165 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 STON1Q9Y6Q2 735 aa17.34■□□□□ 0.37
VPS53-218ENST00000575207 TSPAN3O60637 253 aa17.33■□□□□ 0.36
VPS53-218ENST00000575207 EPHA8P29322 1005 aaPredicted RBP17.33■□□□□ 0.36
VPS53-218ENST00000575207 C21orf59P57076 290 aa17.33■□□□□ 0.36
VPS53-218ENST00000575207 ANO4Q32M45 955 aa17.33■□□□□ 0.36
VPS53-218ENST00000575207 TMEM25Q86YD3 366 aa17.33■□□□□ 0.36
VPS53-218ENST00000575207 SLC46A1Q96NT5 459 aa17.33■□□□□ 0.36
VPS53-218ENST00000575207 RWDD1Q9H446 243 aaPredicted RBP17.33■□□□□ 0.36
VPS53-218ENST00000575207 TUFT1Q9NNX1 390 aa17.33■□□□□ 0.36
VPS53-218ENST00000575207 DNAJC17Q9NVM6 304 aaKnown RBP17.33■□□□□ 0.36
VPS53-218ENST00000575207 SCN1AP35498 2009 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 ARHGEF35A5YM69 484 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 ZNF840PA6NDX5 716 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 LACTBL1A8MY62 500 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 OAS1P00973 400 aaKnown RBP17.32■□□□□ 0.36
VPS53-218ENST00000575207 ADRB2P07550 413 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 ACADMP11310 421 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 ACSL1P33121 698 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 NPTX2P47972 431 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 FOSBP53539 338 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 RACK1P63244 317 aaKnown RBP17.32■□□□□ 0.36
VPS53-218ENST00000575207 PPP2R3AQ06190 1150 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 ENPP2Q13822 863 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 PROX2Q3B8N5 592 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 ZSCAN23Q3MJ62 389 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 CFAP221Q4G0U5 840 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 SGF29Q96ES7 293 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 DEPDC7Q96QD5 511 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 ADGRG4Q8IZF6 3080 aa17.32■□□□□ 0.36
VPS53-218ENST00000575207 PCNX1Q96RV3 2341 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 CCDC169A6NNP5 214 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 CACNG3O60359 315 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 PPP3CCP48454 512 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 COPAP53621 1224 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 MCL1Q07820 350 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 PDIA5Q14554 519 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 RNF20Q5VTR2 975 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 USP53Q70EK8 1073 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 SPATA20Q8TB22 786 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 PKMYT1Q99640 499 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 PYM1Q9BRP8 204 aaKnown RBP17.31■□□□□ 0.36
VPS53-218ENST00000575207 GEMIN8Q9NWZ8 242 aaKnown RBP17.31■□□□□ 0.36
VPS53-218ENST00000575207 LRWD1Q9UFC0 647 aa17.31■□□□□ 0.36
VPS53-218ENST00000575207 ATXN7L1Q9ULK2 861 aaPredicted RBP17.31■□□□□ 0.36
VPS53-218ENST00000575207 TP53BP1Q12888 1972 aaPredicted RBP17.3■□□□□ 0.36
VPS53-218ENST00000575207 MED24O75448 989 aa17.3■□□□□ 0.36
VPS53-218ENST00000575207 RBMS1P29558 406 aaKnown RBP17.3■□□□□ 0.36
VPS53-218ENST00000575207 CASRP41180 1078 aa17.3■□□□□ 0.36
VPS53-218ENST00000575207 PEX3P56589 373 aa17.3■□□□□ 0.36
VPS53-218ENST00000575207 SKIDA1Q1XH10 827 aa17.3■□□□□ 0.36
VPS53-218ENST00000575207 FAM124AQ86V42 546 aa17.3■□□□□ 0.36
VPS53-218ENST00000575207 ZNF564Q8TBZ8 553 aaPredicted RBP17.3■□□□□ 0.36
VPS53-218ENST00000575207 CEP295NLQ96MC4 621 aa17.3■□□□□ 0.36
VPS53-218ENST00000575207 ACBD6Q9BR61 282 aa17.3■□□□□ 0.36
VPS53-218ENST00000575207 RBM19Q9Y4C8 960 aaKnown RBP17.3■□□□□ 0.36
VPS53-218ENST00000575207 CELSR1Q9NYQ6 3014 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 CDRT15L2A8MXV6 281 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 NPC1O15118 1278 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 CSO75390 466 aaKnown RBP17.29■□□□□ 0.36
VPS53-218ENST00000575207 C7P10643 843 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 ARRB1P49407 418 aaPredicted RBP17.29■□□□□ 0.36
VPS53-218ENST00000575207 NCAPHQ15003 741 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 SKA1Q96BD8 255 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 FUBP3Q96I24 572 aaKnown RBP eCLIP17.29■□□□□ 0.36
VPS53-218ENST00000575207 SPATA17Q96L03 361 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 XPO6Q96QU8 1125 aaKnown RBP17.29■□□□□ 0.36
VPS53-218ENST00000575207 TTLL2Q9BWV7 592 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 TJP2Q9UDY2 1190 aa17.29■□□□□ 0.36
VPS53-218ENST00000575207 CLDN3O15551 220 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 LZTS3O60299 673 aaPredicted RBP17.28■□□□□ 0.36
VPS53-218ENST00000575207 GJB6O95452 261 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 CISD3P0C7P0 127 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 MBL2P11226 248 aaPredicted RBP17.28■□□□□ 0.36
VPS53-218ENST00000575207 MAGEA11P43364 429 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 RXRGP48443 463 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 TAF6P49848 677 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 BCAT1P54687 386 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 USP46P62068 366 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 BNIP3Q12983 259 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 ADCK5Q3MIX3 580 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 INTS6LQ5JSJ4 861 aaKnown RBP17.28■□□□□ 0.36
VPS53-218ENST00000575207 ZPBP2Q6X784 338 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 PIK3AP1Q6ZUJ8 805 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 SCN4BQ8IWT1 228 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 BBS7Q8IWZ6 715 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 TRIM22Q8IYM9 498 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 HAPLN2Q9GZV7 340 aa17.28■□□□□ 0.36
VPS53-218ENST00000575207 A0A1W2PNU3 283 aaPredicted RBP17.27■□□□□ 0.36
VPS53-218ENST00000575207 OPA1O60313 960 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 SYNCRIPO60506 623 aaKnown RBP17.27■□□□□ 0.36
VPS53-218ENST00000575207 SEMA4FO95754 770 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 WNT1P04628 370 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 MYL7Q01449 175 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 ENOX2Q16206 610 aaKnown RBP17.27■□□□□ 0.36
VPS53-218ENST00000575207 CALCRLQ16602 461 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 TSGA10IPQ3SY00 556 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 DENND5BQ6ZUT9 1274 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 BRF1Q92994 677 aa17.27■□□□□ 0.36
VPS53-218ENST00000575207 PRR11Q96HE9 360 aaPredicted RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms