RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 ZNF461Q8TAF7 563 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 KCNG4Q8TDN1 519 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 FGF13Q92913 245 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 NELL2Q99435 816 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 ACO2Q99798 780 aaKnown RBP10.07□□□□□ -0.8
CIITA-208ENST00000572665 AARSD1Q9BTE6 412 aaKnown RBP10.07□□□□□ -0.8
CIITA-208ENST00000572665 KIFC3Q9BVG8 833 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 UPF2Q9HAU5 1272 aaKnown RBP10.07□□□□□ -0.8
CIITA-208ENST00000572665 SEMA3GQ9NS98 782 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 GDE1Q9NZC3 331 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 LARSQ9P2J5 1176 aaKnown RBP10.07□□□□□ -0.8
CIITA-208ENST00000572665 CACNG4Q9UBN1 327 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 MRPS23Q9Y3D9 190 aaKnown RBP10.07□□□□□ -0.8
CIITA-208ENST00000572665 SNX11Q9Y5W9 270 aa10.07□□□□□ -0.8
CIITA-208ENST00000572665 ESYT3A0FGR9 886 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 E9PMD0 336 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 H3BQV1 296 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 PODXLO00592 558 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 TOM1L1O75674 476 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 KCNH1O95259 989 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 LMNAP02545 664 aaKnown RBP10.06□□□□□ -0.8
CIITA-208ENST00000572665 GSNP06396 782 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 KCNE1P15382 129 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 TKTP29401 623 aaKnown RBP10.06□□□□□ -0.8
CIITA-208ENST00000572665 MARCKSP29966 332 aaPredicted RBP10.06□□□□□ -0.8
CIITA-208ENST00000572665 MATR3P43243 847 aaKnown RBP eCLIP10.06□□□□□ -0.8
CIITA-208ENST00000572665 STARD6P59095 220 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 RABEP1Q15276 862 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 XKR4Q5GH76 650 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 TPGS2Q68CL5 300 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 IQCEQ6IPM2 695 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 SLC8B1Q6J4K2 584 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 RINT1Q6NUQ1 792 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 ASCL5Q7RTU5 278 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 C4orf32Q8N8J7 132 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 LEMD2Q8NC56 503 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 PJA1Q8NG27 643 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 FEZF2Q8TBJ5 459 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 TCTN2Q96GX1 697 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 TSPAN18Q96SJ8 248 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 NTPCRQ9BSD7 190 aaKnown RBP10.06□□□□□ -0.8
CIITA-208ENST00000572665 OSBPL6Q9BZF3 934 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 CDT1Q9H211 546 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 ARHGAP28Q9P2N2 729 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 MRPS17Q9Y2R5 130 aaKnown RBP10.06□□□□□ -0.8
CIITA-208ENST00000572665 PCDHB6Q9Y5E3 794 aa10.06□□□□□ -0.8
CIITA-208ENST00000572665 PDCD11Q14690 1871 aaKnown RBP10.06□□□□□ -0.8
CIITA-208ENST00000572665 KANSL1LA0AUZ9 987 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ARHGEF37A1IGU5 675 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 WASH4PA8MWX3 477 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 CLDN3O15551 220 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ECI2O75521 394 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 PLS3P13797 630 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ATF2P15336 505 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 PAX3P23760 479 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 TPP2P29144 1249 aaPredicted RBP10.05□□□□□ -0.8
CIITA-208ENST00000572665 MCM2P49736 904 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 OSTNP61366 133 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 PLD1Q13393 1074 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 NOLC1Q14978 699 aaKnown RBP eCLIP10.05□□□□□ -0.8
CIITA-208ENST00000572665 ZRSR1Q15695 479 aaKnown RBP10.05□□□□□ -0.8
CIITA-208ENST00000572665 MLF2Q15773 248 aaPredicted RBP10.05□□□□□ -0.8
CIITA-208ENST00000572665 GAB4Q2WGN9 574 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 SPECC1Q5M775 1068 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 CYP4A22Q5TCH4 519 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ARL6IP4Q66PJ3 421 aaKnown RBP10.05□□□□□ -0.8
CIITA-208ENST00000572665 ZNF280DQ6N043 979 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 CRTC3Q6UUV7 619 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 PARM1Q6UWI2 310 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ALKAL1Q6UXT8 129 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ZPBP2Q6X784 338 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 C1orf186Q6ZWK4 172 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 C1orf210Q8IVY1 113 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ADSSL1Q8N142 457 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ZSWIM2Q8NEG5 633 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 BTN2A2Q8WVV5 523 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 FGF14Q92915 247 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 BICD1Q96G01 975 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 CALML4Q96GE6 196 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 SNX27Q96L92 541 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 AK8Q96MA6 479 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 TARS2Q9BW92 718 aaKnown RBP10.05□□□□□ -0.8
CIITA-208ENST00000572665 PLEKHA5Q9HAU0 1116 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 CYP4F11Q9HBI6 524 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 PTPRHQ9HD43 1115 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 FANCLQ9NW38 375 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 ANKFY1Q9P2R3 1169 aa10.05□□□□□ -0.8
CIITA-208ENST00000572665 DNMT3BQ9UBC3 853 aaKnown RBP10.05□□□□□ -0.8
CIITA-208ENST00000572665 CACNA1HO95180 2353 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 DOCK6Q96HP0 2047 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 TRAV20A0A0B4J274 112 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 SLC16A4O15374 487 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 ABLIM3O94929 683 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 BMP15O95972 392 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 EDN1P05305 212 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 RHOP08100 348 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 PROZP22891 400 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 HSD3B2P26439 372 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 GRIA2P42262 883 aa10.04□□□□□ -0.8
CIITA-208ENST00000572665 TOB1P50616 345 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms