RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GPR161Q8N6U8 529 aaKnown RBP15.66■□□□□ 0.1
CLN3-213ENST00000565047 GAB3Q8WWW8 586 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 PNKPQ96T60 521 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 ZSWIM1Q9BR11 485 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 SPHK2Q9NRA0 654 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 NUDT5Q9UKK9 219 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 SLC8A2Q9UPR5 921 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 SH3BP1Q9Y3L3 701 aa15.66■□□□□ 0.1
CLN3-213ENST00000565047 RNF225M0QZC1 329 aaPredicted RBP15.65■□□□□ 0.1
CLN3-213ENST00000565047 BIN1O00499 593 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 MDM4O15151 490 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 P4HA2O15460 535 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 KLKB1P03952 638 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 PSEN1P49768 467 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 MRPS21P82921 87 aaKnown RBP15.65■□□□□ 0.1
CLN3-213ENST00000565047 GAD2Q05329 585 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 STIM1Q13586 685 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 EMC10Q5UCC4 262 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 KLHL10Q6JEL2 608 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 RASSF3Q86WH2 238 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 KAT5Q92993 513 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 ZC3H10Q96K80 434 aaKnown RBP15.65■□□□□ 0.1
CLN3-213ENST00000565047 HHIPQ96QV1 700 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 HINFPQ9BQA5 517 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 MARK1Q9P0L2 795 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 MYH10P35580 1976 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 CEP250Q9BV73 2442 aa15.65■□□□□ 0.1
CLN3-213ENST00000565047 CACNA1AO00555 2505 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 O00370 1275 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 TRIM24O15164 1050 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 LRP3O75074 770 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 TULP3O75386 442 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 STC2O76061 302 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 IRF1P10914 325 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 GRIA2P42262 883 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 TNFRSF4P43489 277 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 PLA2G4AP47712 749 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 UBE2HP62256 183 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 PDE4CQ08493 712 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 LRMPQ12912 555 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 C2orf27AQ580R0 203 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 TMEM92Q6UXU6 159 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 PRR23BQ6ZRT6 265 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 IL17RCQ8NAC3 791 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 CCDC26Q8TAB7 109 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 TFAP2BQ92481 460 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 ACDQ96AP0 544 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 KIAA1468Q9P260 1216 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 DNMT3LQ9UJW3 386 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 NAGPAQ9UK23 515 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 TSPAN16Q9UKR8 245 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 MMP17Q9ULZ9 603 aa15.64■□□□□ 0.09
CLN3-213ENST00000565047 BICDL2A1A5D9 508 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 SGK1O00141 431 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 XPO1O14980 1071 aaKnown RBP15.63■□□□□ 0.09
CLN3-213ENST00000565047 AXIN1O15169 862 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 ADAM23O75077 832 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 RPP40O75818 363 aaKnown RBP15.63■□□□□ 0.09
CLN3-213ENST00000565047 APBB3O95704 486 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 CISD3P0C7P0 127 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 VDRP11473 427 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 TBXAS1P24557 533 aaPredicted RBP15.63■□□□□ 0.09
CLN3-213ENST00000565047 ZNF132P52740 706 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 SEC13P55735 322 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 STX17P56962 302 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 SPEM2Q0P670 501 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 CRY1Q16526 586 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 GOLGA7BQ2TAP0 167 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 KBTBD6Q86V97 674 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 TRIML1Q8N9V2 468 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 SECISBP2LQ93073 1101 aaKnown RBP15.63■□□□□ 0.09
CLN3-213ENST00000565047 LOXL4Q96JB6 756 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 DNAI2Q9GZS0 605 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 CD248Q9HCU0 757 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 ARHGEF4Q9NR80 690 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 FBXO10Q9UK96 956 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 GMEB2Q9UKD1 530 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 RAB23Q9ULC3 237 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 KIAA1257Q9ULG3 409 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 CNTN6Q9UQ52 1028 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 CTNND2Q9UQB3 1225 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 STARD13Q9Y3M8 1113 aa15.63■□□□□ 0.09
CLN3-213ENST00000565047 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.62■□□□□ 0.09
CLN3-213ENST00000565047 CACNG3O60359 315 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 ZBED1O96006 694 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 APODP05090 189 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 PAEPP09466 180 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 TKTL1P51854 596 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 BCAT1P54687 386 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 KCNH2Q12809 1159 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 PAK1Q13153 545 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 CSRP2Q16527 193 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 HSF5Q4G112 596 aaPredicted RBP15.62■□□□□ 0.09
CLN3-213ENST00000565047 SGO2Q562F6 1265 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 C10orf120Q5SQS8 335 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 LCLAT1Q6UWP7 414 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 ERMP1Q7Z2K6 904 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 CACNA2D4Q7Z3S7 1137 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 IRF2BP1Q8IU81 584 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 ARHGEF19Q8IW93 802 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms