RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 WDYHV1Q96HA8 205 aa2.86□□□□□ -1.95
SRP54-204ENST00000553923 LMLNQ96KR4 655 aa2.86□□□□□ -1.95
SRP54-204ENST00000553923 RPS6KC1Q96S38 1066 aa2.86□□□□□ -1.95
SRP54-204ENST00000553923 TYW1Q9NV66 732 aaKnown RBP2.86□□□□□ -1.95
SRP54-204ENST00000553923 C2CD4BA6NLJ0 364 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 ALG1L2C9J202 215 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 PSMD9O00233 223 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 CLIC1O00299 241 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 SPTLC2O15270 562 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 SH3BP5O60239 455 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 CPA2P48052 419 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 ARFIP2P53365 341 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 PGGT1BP53609 377 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 TIRAPP58753 221 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 SATB1Q01826 763 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 KRT17Q04695 432 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 CCNIQ14094 377 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 KCNB1Q14721 858 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 PPP2R5AQ15172 486 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 RALBP1Q15311 655 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 PGS1Q32NB8 556 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 MANEAQ5SRI9 462 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 CERCAMQ5T4B2 595 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 GFI1BQ5VTD9 330 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 DCAF12L1Q5VU92 463 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 CUZD1Q86UP6 607 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 COL23A1Q86Y22 540 aaPredicted RBP2.85□□□□□ -1.95
SRP54-204ENST00000553923 DNAJC5GQ8N7S2 189 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 PPP2R3CQ969Q6 453 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 NLRP4Q96MN2 994 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 MPHOSPH6Q99547 160 aaKnown RBP2.85□□□□□ -1.95
SRP54-204ENST00000553923 SMAD5Q99717 465 aaKnown RBP2.85□□□□□ -1.95
SRP54-204ENST00000553923 ARHGAP39Q9C0H5 1083 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 SEMA5BQ9P283 1151 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 MGAT4CQ9UBM8 478 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 MAFFQ9ULX9 164 aa2.85□□□□□ -1.95
SRP54-204ENST00000553923 THRAP3Q9Y2W1 955 aaKnown RBP2.85□□□□□ -1.95
SRP54-204ENST00000553923 HMGB1P1B2RPK0 211 aaPredicted RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 RRHO14718 337 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 CTIFO43310 598 aaKnown RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 KRT18P05783 430 aaKnown RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 CREB1P16220 341 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 ATF3P18847 181 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 PAX3P23760 479 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 UQCRC1P31930 480 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 MCM5P33992 734 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 PRKAG1P54619 331 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 TIAL1Q01085 375 aaKnown RBP eCLIP2.84□□□□□ -1.95
SRP54-204ENST00000553923 MFSD13AQ14CX5 517 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 BRD3Q15059 726 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 ODF3L2Q3SX64 289 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 MAP9Q49MG5 647 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 PLA1AQ53H76 456 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 CAPRIN2Q6IMN6 1127 aaKnown RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 SLC15A4Q8N697 577 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 C12orf76Q8N812 135 aaPredicted RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 MIB2Q96AX9 1013 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 WBP1Q96G27 269 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 C8orf48Q96LL4 319 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 SLITRK1Q96PX8 696 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 P2RX7Q99572 595 aaKnown RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 TM2D2Q9BX73 214 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 VN1R3Q9BXE9 311 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 GTPBP4Q9BZE4 634 aaKnown RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 TRIM5Q9C035 493 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 SARS2Q9NP81 518 aaKnown RBP2.84□□□□□ -1.95
SRP54-204ENST00000553923 SNX15Q9NRS6 342 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 PCDHA12Q9UN75 941 aa2.84□□□□□ -1.95
SRP54-204ENST00000553923 NOTCH3Q9UM47 2321 aa2.84□□□□□ -1.96
SRP54-204ENST00000553923 EVPLQ92817 2033 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 A0A0G2JK05 382 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 TMPRSS11DO60235 418 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 ATG13O75143 517 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 CAND2O75155 1236 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 ALDH1L1O75891 902 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 SNUPNO95149 360 aaKnown RBP2.83□□□□□ -1.96
SRP54-204ENST00000553923 NDUFB8O95169 186 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 IGKV3-20P01619 116 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 CENPBP07199 599 aaPredicted RBP2.83□□□□□ -1.96
SRP54-204ENST00000553923 TACR3P29371 465 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 IL6STP40189 918 aaPredicted RBP2.83□□□□□ -1.96
SRP54-204ENST00000553923 RECQLP46063 649 aaPredicted RBP2.83□□□□□ -1.96
SRP54-204ENST00000553923 KRTAP10-12P60413 245 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 DEUP1Q05D60 604 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 CTBP1Q13363 440 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 HDAC1Q13547 482 aaPredicted RBP2.83□□□□□ -1.96
SRP54-204ENST00000553923 TTF1Q15361 905 aaPredicted RBP2.83□□□□□ -1.96
SRP54-204ENST00000553923 FAM110CQ1W6H9 321 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 PRTGQ2VWP7 1150 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 SYCP2LQ5T4T6 812 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 DENND2CQ68D51 928 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 KSR2Q6VAB6 950 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 CATIPQ7Z7H3 387 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 BCAS4Q8TDM0 211 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 TRMT61AQ96FX7 289 aaKnown RBP2.83□□□□□ -1.96
SRP54-204ENST00000553923 HIC2Q96JB3 615 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 CDK5RAP3Q96JB5 506 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 DPH1Q9BZG8 443 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 MYLK2Q9H1R3 596 aa2.83□□□□□ -1.96
SRP54-204ENST00000553923 AGO4Q9HCK5 861 aaKnown RBP2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms