RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TGFBRAP1Q8WUH2 860 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 GSDMCQ9BYG8 508 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 ANO3Q9BYT9 981 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 DHX35Q9H5Z1 703 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 PAK5Q9P286 719 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 NFKBIL1Q9UBC1 381 aaPredicted RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 A0A1W2PP64 1363 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 PPP1R3GB7ZBB8 358 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 H7C2Y5 167 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 GSC2O15499 205 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 DCXO43602 365 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 SAMD4BQ5PRF9 694 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 EFL1Q7Z2Z2 1120 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 FAM172AQ8WUF8 416 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 CENPIQ92674 756 aaPredicted RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 ZNF333Q96JL9 665 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 SARS2Q9NP81 518 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 RNMTO43148 476 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 DHFRP00374 187 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 TSPAN19P0C672 248 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 TPBGLP0DKB5 382 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 POU1F1P28069 291 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 GNA15P30679 374 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 CRKP46108 304 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 VAMP7P51809 220 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 OSTNP61366 133 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 RPL10AP62906 217 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 TFAMQ00059 246 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 ZNF267Q14586 743 aaPredicted RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 SMCO1Q147U7 214 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 PQLC1Q8N2U9 271 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 AKAP1Q92667 903 aaKnown RBP eCLIP9.01□□□□□ -0.97
YBX3-208ENST00000540447 EYA1Q99502 592 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 XKR8Q9H6D3 395 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 CATSPERZQ9NTU4 200 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 LMCD1Q9NZU5 365 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 SNX7Q9UNH6 387 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 FLT4P35916 1363 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 PSMD12O00232 456 aaPredicted RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 COQ9O75208 318 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 NME5P56597 212 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 GTF2IP78347 998 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 KLHDC7AQ5VTJ3 777 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 NFATC2IPQ8NCF5 419 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 ADCY4Q8NFM4 1077 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 UTP15Q8TED0 518 aaKnown RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 SLC4A9Q96Q91 983 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 POLR3BQ9NW08 1133 aaPredicted RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 FKBP14Q9NWM8 211 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 CDH9Q9ULB4 789 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 NIP7Q9Y221 180 aaKnown RBP eCLIP9.01□□□□□ -0.97
YBX3-208ENST00000540447 SLC9A8Q9Y2E8 581 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 ISPDA4D126 451 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 ARIH2O95376 493 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 OR2B6P58173 313 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 ENPEPQ07075 957 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 TXNRD1Q16881 649 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 PGS1Q32NB8 556 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 SPAG16Q8N0X2 631 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 CLHC1Q8NHS4 586 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 HPS3Q969F9 1004 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 DENND2DQ9H6A0 471 aaPredicted RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 SH3GLB2Q9NR46 395 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 PNMA8BQ9ULN7 279 aaPredicted RBP9.01□□□□□ -0.97
YBX3-208ENST00000540447 MAPRE3Q9UPY8 281 aa9.01□□□□□ -0.97
YBX3-208ENST00000540447 FLT1P17948 1338 aa9□□□□□ -0.97
YBX3-208ENST00000540447 MROH5Q6ZUA9 1318 aa9□□□□□ -0.97
YBX3-208ENST00000540447 CYP26A1O43174 497 aa9□□□□□ -0.97
YBX3-208ENST00000540447 CPNE3O75131 537 aaKnown RBP9□□□□□ -0.97
YBX3-208ENST00000540447 CYP2D6P10635 497 aa9□□□□□ -0.97
YBX3-208ENST00000540447 XPAP23025 273 aaPredicted RBP9□□□□□ -0.97
YBX3-208ENST00000540447 GRK3P35626 688 aa9□□□□□ -0.97
YBX3-208ENST00000540447 HALP42357 657 aa9□□□□□ -0.97
YBX3-208ENST00000540447 ATP2C1P98194 919 aaPredicted RBP9□□□□□ -0.97
YBX3-208ENST00000540447 CCNIQ14094 377 aa9□□□□□ -0.97
YBX3-208ENST00000540447 ZCCHC8Q6NZY4 707 aaKnown RBP9□□□□□ -0.97
YBX3-208ENST00000540447 DGKHQ86XP1 1220 aa9□□□□□ -0.97
YBX3-208ENST00000540447 C12orf56Q8IXR9 622 aa9□□□□□ -0.97
YBX3-208ENST00000540447 OR6P1Q8NGX9 317 aa9□□□□□ -0.97
YBX3-208ENST00000540447 KBTBD7Q8WVZ9 684 aa9□□□□□ -0.97
YBX3-208ENST00000540447 S100PBPQ96BU1 408 aa9□□□□□ -0.97
YBX3-208ENST00000540447 NXNL1Q96CM4 212 aa9□□□□□ -0.97
YBX3-208ENST00000540447 KANSL2Q9H9L4 492 aa9□□□□□ -0.97
YBX3-208ENST00000540447 CAB39LQ9H9S4 337 aa9□□□□□ -0.97
YBX3-208ENST00000540447 HPS4Q9NQG7 708 aa9□□□□□ -0.97
YBX3-208ENST00000540447 HTR3EA5X5Y0 456 aa9□□□□□ -0.97
YBX3-208ENST00000540447 PIK3CDO00329 1044 aa9□□□□□ -0.97
YBX3-208ENST00000540447 KATNA1O75449 491 aa9□□□□□ -0.97
YBX3-208ENST00000540447 RHOBTB3O94955 611 aa9□□□□□ -0.97
YBX3-208ENST00000540447 CRYZL1O95825 349 aa9□□□□□ -0.97
YBX3-208ENST00000540447 LINGO3P0C6S8 592 aa9□□□□□ -0.97
YBX3-208ENST00000540447 RALAP11233 206 aa9□□□□□ -0.97
YBX3-208ENST00000540447 MAZP56270 477 aaKnown RBP9□□□□□ -0.97
YBX3-208ENST00000540447 PID1Q7Z2X4 250 aa9□□□□□ -0.97
YBX3-208ENST00000540447 TTC29Q8NA56 475 aaPredicted RBP9□□□□□ -0.97
YBX3-208ENST00000540447 OSBP2Q969R2 916 aa9□□□□□ -0.97
YBX3-208ENST00000540447 APOPT1Q96IL0 206 aa9□□□□□ -0.97
YBX3-208ENST00000540447 WDR41Q9HAD4 459 aa9□□□□□ -0.97
YBX3-208ENST00000540447 CXorf21Q9HAI6 301 aa9□□□□□ -0.97
YBX3-208ENST00000540447 PRKAG3Q9UGI9 489 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms