RNA–Protein interactions for RNA: ENST00000525141.1

SMCO4-202, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SMCO4, Length 889 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-202ENST00000525141 PHTF2Q8N3S3 785 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 RPLP0P6Q8NHW5 317 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 USP33Q8TEY7 942 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 CNOT6LQ96LI5 555 aaKnown RBP13.23□□□□□ -0.29
SMCO4-202ENST00000525141 HINFPQ9BQA5 517 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 FAM124BQ9H5Z6 455 aaPredicted RBP13.23□□□□□ -0.29
SMCO4-202ENST00000525141 CISHQ9NSE2 258 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 DLL3Q9NYJ7 618 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 NCDNQ9UBB6 729 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 NUDT5Q9UKK9 219 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 HCN2Q9UL51 889 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 SCML2Q9UQR0 700 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.23□□□□□ -0.29
SMCO4-202ENST00000525141 USP3Q9Y6I4 520 aa13.23□□□□□ -0.29
SMCO4-202ENST00000525141 ABCA7Q8IZY2 2146 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 CCDC163A0A0D9SF12 145 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 CLSTN1O94985 981 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 FAM200BP0CF97 657 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 ACO1P21399 889 aaKnown RBP13.22□□□□□ -0.29
SMCO4-202ENST00000525141 TUBP50607 506 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 TYRO3Q06418 890 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 SPEM2Q0P670 501 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 CETN1Q12798 172 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 PRR23BQ6ZRT6 265 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 HTR3DQ70Z44 454 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 SYT13Q7L8C5 426 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 BBS7Q8IWZ6 715 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 CAMKK1Q8N5S9 505 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 FAM160A2Q8N612 972 aaPredicted RBP13.22□□□□□ -0.29
SMCO4-202ENST00000525141 UBR7Q8N806 425 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 TMEM176AQ96HP8 235 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 HEXIM2Q96MH2 286 aaKnown RBP13.22□□□□□ -0.29
SMCO4-202ENST00000525141 UBXN6Q9BZV1 441 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 NAT10Q9H0A0 1025 aaKnown RBP13.22□□□□□ -0.29
SMCO4-202ENST00000525141 FBXO44Q9H4M3 255 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 SLC8A2Q9UPR5 921 aa13.22□□□□□ -0.29
SMCO4-202ENST00000525141 KIAA1549LQ6ZVL6 1849 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 A0A1W2PQH9 124 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 SLC9A3R1O14745 358 aaPredicted RBP13.21□□□□□ -0.29
SMCO4-202ENST00000525141 MDM4O15151 490 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 TRIM24O15164 1050 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 CYP26A1O43174 497 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 TLR5O60602 858 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 AFPP02771 609 aaKnown RBP13.21□□□□□ -0.29
SMCO4-202ENST00000525141 RETP07949 1114 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 KIR2DL1P43626 348 aaPredicted RBP13.21□□□□□ -0.29
SMCO4-202ENST00000525141 DMC1Q14565 340 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 RSPO4Q2I0M5 234 aaPredicted RBP13.21□□□□□ -0.29
SMCO4-202ENST00000525141 C2orf27AQ580R0 203 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 ARHGAP17Q68EM7 881 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 LAIR1Q6GTX8 287 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 C11orf57Q6ZUT1 292 aaPredicted RBP13.21□□□□□ -0.29
SMCO4-202ENST00000525141 ETFBKMTQ8IXQ9 262 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 LMO3Q8TAP4 145 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 JAKMIP2Q96AA8 810 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 HHIPQ96QV1 700 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 CYLDQ9NQC7 956 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 TLR8Q9NR97 1041 aaKnown RBP13.21□□□□□ -0.29
SMCO4-202ENST00000525141 TBC1D14Q9P2M4 693 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 NFE2L3Q9Y4A8 694 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 RALGAPA1Q6GYQ0 2036 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 CACNA1AO00555 2505 aa13.21□□□□□ -0.29
SMCO4-202ENST00000525141 RNF225M0QZC1 329 aaPredicted RBP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 TULP2O00295 520 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 DCLK1O15075 740 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 AXIN1O15169 862 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 KLKB1P03952 638 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 RARGP13631 454 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 EEF1GP26641 437 aaKnown RBP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 MTIF2P46199 727 aaKnown RBP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 ATXN1P54253 815 aaKnown RBP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 SEC13P55735 322 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 RAB41Q5JT25 222 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 TMEM92Q6UXU6 159 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 KBTBD6Q86V97 674 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 TTC30AQ86WT1 665 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 DDX42Q86XP3 938 aaKnown RBP eCLIP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 CREBRFQ8IUR6 639 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 ZNF276Q8N554 614 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 TTC39CQ8N584 583 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 CCDC33Q8N5R6 958 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 GPR161Q8N6U8 529 aaKnown RBP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 NAT16Q8N8M0 369 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 EHBP1Q8NDI1 1231 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 GAB3Q8WWW8 586 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 NDRG1Q92597 394 aaKnown RBP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 PNKPQ96T60 521 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 BPIFA3Q9BQP9 254 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 PNPLA8Q9NP80 782 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 SAMSN1Q9NSI8 373 aaKnown RBP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.2□□□□□ -0.3
SMCO4-202ENST00000525141 EBF1Q9UH73 591 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 DNAH14Q0VDD8 3507 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 SPAG17Q6Q759 2223 aa13.2□□□□□ -0.3
SMCO4-202ENST00000525141 GTPBP10A4D1E9 387 aaKnown RBP13.19□□□□□ -0.3
SMCO4-202ENST00000525141 KAT7O95251 611 aa13.19□□□□□ -0.3
SMCO4-202ENST00000525141 CISD3P0C7P0 127 aa13.19□□□□□ -0.3
SMCO4-202ENST00000525141 IRF1P10914 325 aa13.19□□□□□ -0.3
SMCO4-202ENST00000525141 ADH5P11766 374 aa13.19□□□□□ -0.3
SMCO4-202ENST00000525141 ATP5C1P36542 298 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms